On 10.03.2010 12:45, alison waller wrote:
Thanks Gabor,
As I said I would like to use gsubfn, but I am having problems
installing it, which I assume are due to some conflict with the current
tcltk package
Below is the error I got after issuing install.packages("gsubfn")
Any advice?
Re-install R including the tcltk package?
Uwe Ligges
###################
* Installing *source* package 'gsubfn' ...
** R
** demo
** inst
** preparing package for lazy loading
Warning: S3 methods '$.tclvar', '$<-.tclvar', 'as.character.tclObj',
'as.character.tclVar', 'as.double.tclObj', 'as.integer.tclObj',
'as.logical.tclObj', 'print.tclObj', '[[.tclArray', '[[<-.tclArray',
'$.tclArray', '$<-.tclArray', 'names.tclArray', 'names<-.tclArray',
'length.tclArray', 'length<-.tclArray', 'tclObj.tclVar',
'tclObj<-.tclVar', 'tclvalue.default', 'tclvalue.tclObj',
'tclvalue.tclVar', 'tclvalue<-.default', 'tclvalue<-.tclVar' were
declared in NAMESPACE but not found
Error in namespaceExport(ns, exports) :
undefined exports: addTclPath, as.tclObj, is.tclObj, is.tkwin
Error : package 'tcltk' could not be loaded
ERROR: lazy loading failed for package 'gsubfn'
* Removing '/g/bork3/x86_64/lib64/R/library/gsubfn'
The downloaded packages are in
'/tmp/RtmpkfvT5f/downloaded_packages'
Updating HTML index of packages in '.Library'
Warning message:
In install.packages("gsubfn", lib = "/g/bork3/x86_64/lib64/R/library") :
installation of package 'gsubfn' had non-zero exit status
########## this is the error when I tried to install tcltk#
install.packages("tcltk")
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package 'tcltk' is not available
On 03/09/10 16:26, Gabor Grothendieck wrote:
On Tue, Mar 9, 2010 at 7:10 AM, alison waller<alison.wal...@embl.de> wrote:
Hi all,
Thanks for help with the paste and sprintf syntax.
So I've decided to use paste and or sprintf. 'gsubfn' looks like a
great package but unfortunately I've had problems installing it, as I
don't think it likes the version of tcltk that is installed. I'm
working on a few unix clusters with many computers and there seems to be
problems with different versions of R and different versions of the
packages on different computers.
The fn$ functionality that I mentioned does not use the tcltk package
so the version of tcltk should not matter.
The only part of the package that uses tcltk is strapply, which is not
used here, and even in that case there is R code to it as well if you
use strapply(..., engine = "R") or use ostrapply.
Also the older 0.3-9 version of the gsubfn package did not use tcltk at all.
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