On Jan 5, 2010, at 10:46 AM, Tony Chiang wrote:

You should send this note to the biconductor mailing list rather than the R-help. As to your question, please look at the Biostrings bioconductor
package.

The BioC webpages give a link to the Gmane archive for searching. A search on blast protein sequences produced 15 hits and this one seemed to be potentially relevant:

http://article.gmane.org/gmane.science.biology.informatics.conductor/26460/match=blast+protein+sequences

There may be other postings in that group of fifteen with relevant material. I just wanted to get you going in the right location, which is not this list.

--
David

On Tue, Jan 5, 2010 at 6:09 AM, Alla Bulashevska <
alla.bullashev...@fdm.uni-freiburg.de> wrote:


Dear R users,
I would like to align two protein sequences using BLAST
(bl2seq). The question is whether this programm have been
implemented in R.
Thank you for your help,
Alla.

______________________________________________



David Winsemius, MD
Heritage Laboratories
West Hartford, CT

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