Hi Christoph -- ask questions about Bioconductor packages on the Bioconductor mailing list (provide the output of sessionInfo(), as some of the error message below suggests a seriously out-of-date installation).
http://bioconductor.org/docs/mailList.html Here the likely problem is that some of your other packages require updating, as outlined (several topics down) at http://bioconductor.org/docs/install/ Martin mkna005 mkna005 wrote: > Hi, > I'm trying to get this library working under R2.10.0. I downloaded it > and installed it from zip file. i get the following output. > >> library(hgu133a2.db) > Error in library(hgu133a2.db) : there is no package called 'hgu133a2.db' >> utils:::menuInstallLocal() > package 'hgu133a2.db' successfully unpacked and MD5 sums checked >> library(hgu133a2.db) > Loading required package: AnnotationDbi > Loading required package: Biobase > > Welcome to Bioconductor > > Vignettes contain introductory material. To view, type > 'openVignette()'. To cite Bioconductor, see > 'citation("Biobase")' and for packages 'citation(pkgname)'. > > Loading required package: DBI > Error in fun(...) : could not find function "createAnnObjs.HUMANCHIP_DB" > In addition: Warning message: > package 'hgu133a2.db' was built under R version 2.7.0 and help will > not work correctly > Please re-install it > Error : .onLoad failed in 'loadNamespace' for 'hgu133a2.db' > Error: package/namespace load failed for 'hgu133a2.db' > > Whats the problem and how can I fix it? > > Thanks > > Christoph > > ______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
