Dear Wiza[R]ds,
I am very grateful to Duncan Murdoch for his assistance with this problem.
His help was invaluable. However, the problem has become a little more
complicated for me. Now, in each plot, I need to plot the observed and
fitted values of a supine and upright posture experiment. Here is what I
have and how far I got.
# tritiated (3H)-Norepinephrine(NE) disappearance from plasma
# concentrations supine and upright
# supine
datasu <- data.frame(
time=c(0,1,2,4,6,8,10,15,20),
concsu=c(385.61,265.88,173.87,99.47,66.7,55.27,48.29,39.85,40.66)
)
# upright
dataup <- data.frame(
time=c(0,1,2,4,6,8,10,15,20),
concup=c(767.27,529.03,328.13,225.94,164,151.1,132.02,121.15,70.88)
)
# fit supine
wt.su<- function(resp, time,A1,a1,A2,a2)
{
pred <- A1*exp(-a1*time)+A2*exp(-a2*time)
(resp - pred) / sqrt(pred)
}
fit.wt.su <- nls( ~ wt.su(concsu, time,A1,a1,A2,a2), data=datasu,
start=list(A1=500,a1=1,A2=100,a2=0.2),
trace = TRUE)
summary(fit.wt.su)
# fit upright
wt.up<- function(resp, time,B1,b1,B2,b2)
{
pred <- B1*exp(-b1*time)+B2*exp(-b2*time)
(resp - pred) / sqrt(pred)
}
fit.wt.up <- nls( ~ wt.up(concup, time,B1,b1,B2,b2), data=dataup,
start=list(B1=500,b1=1,B2=100,b2=0.1),
trace = TRUE)
summary(fit.wt.up)
# Function that returns predicted values and graphics
# by Duncan Murdoch
predictionssu <- function(fit, time) {
params <- summary(fit)$coefficients[, 1]
A1 <- params["A1"]
a1 <- params["a1"]
A2 <- params["A2"]
a2 <- params["a2"]
A1*exp(-a1*time)+A2*exp(-a2*time)
}
predictionsup <- function(fit, time) {
params <- summary(fit)$coefficients[, 1]
B1 <- params["B1"]
b1 <- params["b1"]
B2 <- params["B2"]
b2 <- params["b2"]
B1*exp(-b1*time)+B2*exp(-b2*time)
}
# plot observed and predicted values supine and upright in
# each plot type (linear and smi-log)
# this does supine
times <- seq(0,20, len=100)
par(mfrow=c(2,1))
plot(concsu ~ time, data=datasu)
lines(times, predictionssu(fit.wt.su, times))
plot(concsu ~ time, data=datasu, log="y")
lines(times, predictionssu(fit.wt.su, times))
# Need upright in same plots (e.g., dashed line)
Many thanks in advance...
--
Oscar
Oscar A. Linares, MD
Translational Medicine Unit
LaPlaisance Bay, Bolles Harbor
Monroe, Michigan 48161
Department of Medicine,
University of Toledo College of Medicine
Toledo, OH 43606-3390
Department of Internal Medicine,
The Detroit Medical Center (DMC)
Harper University Hospital
Wayne State University School of Medicine
Detroit, Michigan 48201
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