That did it, boy do I feel silly.
Thanks!
On Fri, Nov 13, 2009 at 10:16 PM, Berwin A Turlach
<ber...@maths.uwa.edu.au>wrote:
> G'day Scott,
>
> On Fri, 13 Nov 2009 09:52:43 -0700
> Scott MacDonald <scott.p.macdon...@gmail.com> wrote:
>
> > I am trying to load an hdf5 file into R and running into some
> > problems.
>
> It's a while that I used hdf5 files and that package in R, but:
>
> > This builds fine. The library seems to load without issue, but no
> > data is returned when I try to load a file:
> >
> > > library(hdf5)
> > > hdf5load("test.h5")
> > > NULL
>
> Is NULL the return of the hdf5load command or are you typing it on the
> command line?
>
> Anyway, .hdf5 files can contain several objects, just as R's .rda
> file. load() will load an .rda file and put all objects in that file
> into the workspace. Likewise, hdf5load() loads an hdf5 file and puts
> all objects in that file into the workspace.
>
> > Yet,
> >
> > osx:data scott$ h5dump test.h5 HDF5 "test.h5" { GROUP
> > "/" { DATASET "dset" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE
> > { ( 31 ) / ( 31 ) } DATA { (0): 1, 2, 4, 8, 16, 32, 64, 128, 256,
> > 512, 1024, 2048, 4096, 8192, (14): 16384, 32768, 65536, 131072,
> > 262144, 524288, 1048576, 2097152, (22): 4194304, 8388608, 16777216,
> > 33554432, 67108864, 134217728, (28): 268435456, 536870912,
> > 1073741824 } } } }
> >
> > Any thoughts?
>
> Did you try an ls() after the hdf5load() command? If the hdf5load()
> command was successfull, an ls() should show you that an object with
> name "dset" is now in your workspace; if I read the output above
> correctly.
>
> HTH.
>
> Cheers,
>
> Berwin
>
>
>
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