Hi,
?loadings
print (pca_result$loadings,cutoff=0)
unclass(pca_result$loadings)
--
Andris Jankevics
AIO
Groningen Bioinformatics Centre
Groningen Biomolecular Sciences and Biotechnology Institute
University of Groningen
Kerklaan 30, Haren, 9751 NN, The Netherlands
On Mon, Oct 19, 2009 at 4:34 PM, Peng Yu <pengyu...@gmail.com> wrote:
> On Mon, Oct 19, 2009 at 1:58 AM, Peter Ehlers <ehl...@ucalgary.ca> wrote:
>>
>> Peng Yu wrote:
>>>
>>> Please see below that [3,1] of loadings is not printed. I am wondering
>>> what the problem is?
>>
>> Not trying ?loadings, perhaps??
>
> 'loadings' gives me the same thing.
>
>> pca_result$loadings
>
> Loadings:
> Comp.1 Comp.2 Comp.3 Comp.4
> [1,] 0.556 0.378 -0.467 -0.574
> [2,] -0.511 0.266 -0.761 0.299
> [3,] -0.887 -0.425 -0.169
> [4,] -0.651 0.152 -0.744
>
> Comp.1 Comp.2 Comp.3 Comp.4
> SS loadings 1.00 1.00 1.00 1.00
> Proportion Var 0.25 0.25 0.25 0.25
> Cumulative Var 0.25 0.50 0.75 1.00
>> loadings(pca_result)
>
> Loadings:
> Comp.1 Comp.2 Comp.3 Comp.4
> [1,] 0.556 0.378 -0.467 -0.574
> [2,] -0.511 0.266 -0.761 0.299
> [3,] -0.887 -0.425 -0.169
> [4,] -0.651 0.152 -0.744
>
>
>
>
>
>>>> set.seed(0)
>>>> m=10
>>>> n=4
>>>> X=replicate(n,rnorm(m))
>>>> pca_result=princomp(X)
>>>> svd_result=svd(apply(X,2,function(x){x-mean(x)}))
>>>> pca_result$loadings
>>>
>>> Loadings:
>>> Comp.1 Comp.2 Comp.3 Comp.4
>>> [1,] 0.867 0.306 -0.281 -0.275
>>> [2,] -0.215 0.532 -0.614 0.541
>>> [3,] -0.682 -0.713 -0.155
>>> [4,] -0.448 0.397 -0.186 -0.780
>>>
>>> Comp.1 Comp.2 Comp.3 Comp.4
>>> SS loadings 1.00 1.00 1.00 1.00
>>> Proportion Var 0.25 0.25 0.25 0.25
>>> Cumulative Var 0.25 0.50 0.75 1.00
>>>>
>>>> svd_result$v
>>>
>>> [,1] [,2] [,3] [,4]
>>> [1,] -0.86704537 -0.3060826 0.2810007 -0.2749261
>>> [2,] 0.21540928 -0.5321956 0.6144209 0.5411595
>>> [3,] 0.03936291 0.6823365 0.7134127 -0.1546279
>>> [4,] 0.44752846 -0.3968605 0.1859243 -0.7795205
>>>
>>> ______________________________________________
>>> R-help@r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>>
>>
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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