On Oct 6, 2009, at 8:41 AM, goz wrote:


hello,

i try to use the multcomp letters, but i have problems with my results :

here is my pvalue matrix (from a pairwise.t.test) :

pair=pairwise.t.test(...)
pair$p.value

       0           B            BxS
B    0.01727    -             -
BxS 0.00013    0.00226   -
S    0.87555    0.02610   0.00027


i was thiking to have something like that :
0  B  S  BxS
a  b  a  c

but function return :

multcompLetters(pair$p.value)
 B   BxS   S
"a"  "b"   "a"


first question : why the 0 traitement doesn't appears in result ?

But there is a "0" column. <???>

second  : why the results differs than what i expected ?

Because your understanding of what it means to have "pairwise" comparisons differs from that of the author's.



many thanks.

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