David Freedman wrote:
Thanks for the reminder - actually I think I've become sloppy about the 'T'
(and the order of loading the Hmisc and Design packages), but that doesn't
seem to be the problem. Also, all of my packages have been updated
Note that Frank Harrell already answered that there is a Hmisc - Design
issue which will be fixed early next week.
You had the unfortune to be too up to date and got the bug that was
introduced very recently (and most people who answered had not so recent
packages).
Uwe Ligges
david
Carlos Alzola wrote:
Did you type library(Hmisc,T) before loading Design?
Carlos
--------------------------------------------------
From: "David Freedman" <3.14da...@gmail.com>
Sent: Saturday, September 12, 2009 8:26 AM
To: <r-help@r-project.org>
Subject: Re: [R] could not find function "Varcov" after upgrade of R?
I've had the same problem with predict.Design, and have sent an email to
the
maintainer of the Design package at Vanderbilt University. I wasn't even
able to run the examples given on the help page of predict.Design - I
received the same error about Varcov that you did.
I *think* it's a problem with the package, rather than R 2.9.2, and I
hope
the problem will soon be fixed. I was able to use predict.Design with
2.9.2
until I updated the Design package a few days ago.
david freedman
zhu yao wrote:
I uses the Design library.
take this example:
library(Design)
n <- 1000
set.seed(731)
age <- 50 + 12*rnorm(n)
label(age) <- "Age"
sex <- factor(sample(c('Male','Female'), n,
rep=TRUE, prob=c(.6, .4)))
cens <- 15*runif(n)
h <- .02*exp(.04*(age-50)+.8*(sex=='Female'))
dt <- -log(runif(n))/h
label(dt) <- 'Follow-up Time'
e <- ifelse(dt <= cens,1,0)
dt <- pmin(dt, cens)
units(dt) <- "Year"
dd <- datadist(age, sex)
options(datadist='dd')
Srv <- Surv(dt,e)
f <- cph(Srv ~ rcs(age,4) + sex, x=TRUE, y=TRUE)
cox.zph(f, "rank") # tests of PH
anova(f)
# Error in anova.Design(f) : could not find function "Varcov"
Yao Zhu
Department of Urology
Fudan University Shanghai Cancer Center
No. 270 Dongan Road, Shanghai, China
2009/9/12 Ronggui Huang <ronggui.hu...@gmail.com>
I cannot reproduce the problem you mentioned.
ctl <- c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14)
trt <- c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69)
group <- gl(2,10,20, labels=c("Ctl","Trt"))
weight <- c(ctl, trt)
anova(lm.D9 <- lm(weight ~ group))
sessionInfo()
R version 2.9.2 (2009-08-24)
i386-pc-mingw32
locale:
LC_COLLATE=Chinese (Simplified)_People's Republic of
China.936;LC_CTYPE=Chinese (Simplified)_People's Republic of
China.936;LC_MONETARY=Chinese (Simplified)_People's Republic of
China.936;LC_NUMERIC=C;LC_TIME=Chinese (Simplified)_People's Republic
of China.936
attached base packages:
[1] stats graphics grDevices utils datasets methods base
2009/9/12 zhu yao <mailzhu...@gmail.com>:
After upgrading R to 2.9.2, I can't use the anova() fuction.
It says "could not find function "Varcov" ".
What's wrong with my computer? Help needed, thanks!
Yao Zhu
Department of Urology
Fudan University Shanghai Cancer Center
No. 270 Dongan Road, Shanghai, China
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PLEASE do read the posting guide
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--
HUANG Ronggui, Wincent
Doctoral Candidate
Dept of Public and Social Administration
City University of Hong Kong
Home page: http://asrr.r-forge.r-project.org/rghuang.html
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and provide commented, minimal, self-contained, reproducible code.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
