Re: [R] makefile for sweave

Charles C. Berry Tue, 08 Sep 2009 13:37:44 -0700

On Tue, 8 Sep 2009, Welma Pereira wrote:

Hello, I have the following makefile. The problem is that the bibliography
doesn t work. Any help would be appreciated! I really don t don t what to
do..:-(




# The sources of the report (tex, Rnw and other files (e.g. bib, idx))
TEX_CMPS = Report problem
RNW_CMPS = prop1 prop2 ExeExps
OTHER =  Report.bib

# The name of the report to produce
all: Report.pdf

code: $(RNW_CMPS:=.R)

clean:
   rm -f  *.log *.dvi *~

# On what does the report depends?
Report.pdf: $(TEX_CMPS:=.tex) $(RNW_CMPS:=.tex) ${OTHER} makefile
   TEXINPUTS=${TPUTS} pdflatex $<
   TEXINPUTS=${TPUTS} pdflatex $<


IIRC

        R CMD texi2dvi -p <target.tex>

takes care of finding sweave.sty and running latex thru all the iterationsneeded to build cross-references and a usable pdf.


Try

        R CMD texi2dvi --help

at the shell prompt.

HTH,

Chuck


   rm *.log
#    mv *.aux  $(dir $<)

# How to build the tex files from the Rnw (Sweave) files
%.tex: %.Rnw
   echo "library(utils); options(width=60);  Sweave('$<')" | ${R_PRG}
--no-save --vanilla
   mv $(notdir $*.tex)  $(dir $<)


# How to build the R code files from the Rnw (Sweave) files
%.R: %.Rnw
   echo "library(utils); Stangle('$<')" | ${R_PRG} --no-save --vanilla

%.bib:
   TEXINPUTS=${TPUTS} pdflatex $<
   bibtex $<

%.aux:
   TEXINPUTS=${TPUTS} pdflatex $<
   bibtex $<

%.idx:
   TEXINPUTS=${TPUTS} pdflatex $<
   makeindex $<

cheers!

        [[alternative HTML version deleted]]

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Charles C. Berry                            (858) 534-2098
                                            Dept of Family/Preventive Medicine
E mailto:cbe...@tajo.ucsd.edu               UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901

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and provide commented, minimal, self-contained, reproducible code.

Re: [R] makefile for sweave

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