Hi Kathie,
On Sat, Aug 22, 2009 at 1:03 PM, kathie <kathryn.lord2...@gmail.com> wrote:
Dear Gabor Grothendieck,
>
>
> thank you for your comments.
>
> Ive already tried that. but I've got this error message.
>
>
> > Reduce("+",z)
> Error in f(init, x[[i]]) : non-numeric argument to binary operator
>
>
> anyway, thanks
>
> ps.
>
> > is.matrix(z[[1]][[1]])
> [1] TRUE
>
> I guess the reason "Reduce" doesn't work is that it has multi-dimentional
> list..
Yeah, what about a double reduce:
# Make a list of matrix lists:
R> z <- list(list(matrix(rnorm(25),5), matrix(rnorm(25),5),
matrix(rnorm(25),5)),
list(matrix(rnorm(25),5), matrix(rnorm(25),5)),
list(matrix(rnorm(25),5), matrix(rnorm(25),5),
matrix(rnorm(25),5)))
# Reduce all matrices in the nested lists
R> r1 <- lapply(z, function(ms) Reduce("+", ms))
R> r1
[[1]]
[,1] [,2] [,3] [,4] [,5]
[1,] 2.4884292 1.058375 1.3235864 -1.7800055 3.1095416
[2,] -0.5077567 -1.120329 1.8128142 -1.4255453 1.2478431
[3,] -3.7495272 -2.702159 -2.1013426 -2.1324515 -0.6888855
[4,] -2.7359066 -1.437341 -0.1735794 0.4892164 -1.1855285
[5,] 4.4842963 -2.312451 -0.6797429 0.4563329 0.2108545
[[2]]
[,1] [,2] [,3] [,4] [,5]
[1,] 1.725147 -0.06565073 0.16204140 -0.4859336 1.0162852
[2,] 2.187191 -0.91075148 -2.37727477 1.1329259 -0.3917582
[3,] 1.471685 0.73675444 1.18658159 -0.7677262 1.5632101
[4,] -1.959942 0.51154059 -0.04049294 -1.3777180 -0.9919192
[5,] 0.609865 -2.04175553 1.01257051 1.3094908 -0.9437275
[[3]]
[,1] [,2] [,3] [,4] [,5]
[1,] 0.7896427 1.25712740 1.4208904 -0.4634764 1.3859927
[2,] -0.1193923 -0.03666575 -0.9531145 3.4310667 0.8684956
[3,] -2.3761459 1.16104711 -0.4272411 -2.7792338 -0.3665312
[4,] -2.7372060 1.75061841 -0.6583626 0.6655959 -1.5374698
[5,] -0.5498145 -1.70883781 0.1796487 -0.7663076 -1.3042342
# Reduce that
R> Reduce("+", r1)
[,1] [,2] [,3] [,4] [,5]
[1,] 5.003219 2.2498521 2.9065183 -2.7294155 5.5118195
[2,] 1.560042 -2.0677467 -1.5175750 3.1384472 1.7245805
[3,] -4.653988 -0.8043570 -1.3420022 -5.6794115 0.5077933
[4,] -7.433055 0.8248184 -0.8724350 -0.2229058 -3.7149176
[5,] 4.544347 -6.0630447 0.5124764 0.9995161 -2.0371072
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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