Hi everyone -- I have a number of systems here running CentOS 5.2 and
5.3. Recently, I tried adding a package unrelated to R and found that
yum is complaining about the R repo. Here's the error I get when
running yum update:
----
$ sudo yum update
[snip]
http://cran.r-project.org/bin/linux/redhat/el5/x86_64/repodata/primary.xml.gz:
[Errno -3] Error performing checksum
Trying other mirror.
primary.xml.gz 2.9 kB 00:00
http://cran.r-project.org/bin/linux/redhat/el5/x86_64/repodata/primary.xml.gz:
[Errno -3] Error performing checksum
Trying other mirror.
Error: failure: repodata/primary.xml.gz from CRAN: [Errno 256] No more
mirrors to try.
----
/etc/yum.conf has these lines:
----
# PUT YOUR REPOS HERE OR IN separate files named file.repo
# in /etc/yum.repos.d
[CRAN]
name=CRAN
baseurl=http://cran.r-project.org/bin/linux/redhat/el5/x86_64
----
This error persists even after running "yum clean all" and "rm -f
/var/lib/rpm/__db.00? ; rpm --rebuilddb". I've disabled the CRAN repo
and applied all available updates, and I still get these problems.
I've checked with the folks at CentOS, and they suggested contacting
the repo manager.
Looking at the repo itself, it seems that there's a new version that
was uploaded 10 days ago; I'm wondering if the new package or repo
files are causing me problems somehow.
Has anyone else had this problem? Is there something I need to do to
make updates work?
Please let me know if you need any further information, or if there's
another person or mailing list I should be contacting.
Thanks in advance for any help!
--
Hugh Brown, Systems Manager
The Centre for High-Throughput Biology
hbr...@chibi.ubc.ca
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