Dear R users,
I am new user for elastic net. I am trying to use elasticnet
library.
I have marker data with 359 markers and 168
samples, and response is metabolites. I am trying to do regression between
a metabolite and markers.
But i am getting the following error:
>
en<-enet(marker,as.numeric(vio),lambda=0.5,normalize=FALSE,intercept=TRUE)
Error in one %*% x : requires numeric matrix/vector
arguments
Then, I convert marker into numeric by using the following
command. And, here also getting error.
> as.numeric(marker)
Error: (list) object cannot be coerced to type
'double'
> is.numeric(marker)
[1] FALSE
Alternatively, I converted marker into numeric by using
data.frame command, it seems markers are now converted into numeric.
> is.factor(datafram01[,1])
[1] FALSE
> is.numeric(datafram01[,1])
[1] TRUE
But when i did again elastic net, i got the same error:
>
en<-enet(datafram01,as.numeric(vio),lambda=0.5,normalize=FALSE,intercept=TRUE)
Error in one %*% x : requires numeric matrix/vector
arguments
Does someone have ideas to overcome these problem?
If it is, it will be great help for me.
Thanks in advance.
Sincerely,
Ram Kumar Basnet
Wageningen University,
The Netherlands
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
