Dear List,
I'm an [R] novice starting analysis of an ecological dataset containing the
basal areas of different tree species in a number of research plots.
Example data follow:
> Trees<-data.frame(SppID=as.factor(c(rep('QUEELL',2), rep('QUEALB',3),
'CORAME', 'ACENEG', 'TILAME')), BA=c(907.9, 1104.4, 113.0, 143.1, 452.3,
638.7, 791.7, 804.3), PlotID=as.factor(c('BU3F10', rep('BU3F11',2),
rep('BU3F12',5))))
> Trees
SppID BA PlotID
1 QUEELL 907.9 BU3F10
2 QUEELL 1104.4 BU3F11
3 QUEALB 113.0 BU3F11
4 QUEALB 143.1 BU3F12
5 QUEALB 452.3 BU3F12
6 CORAME 638.7 BU3F12
7 ACENEG 791.7 BU3F12
8 TILAME 804.3 BU3F12
Fields are (in order): Tree Species Code, Basal Area, and Plot Code.
I've been successful in computing summary statistics by species or plot
groups using tapply():
> tapply(BA, PlotID, sum)
BU3F10 BU3F11 BU3F12
907.9 1217.4 2830.1
*My Question* I'd like to perform a similar function that tells me how many
species are in each plot, I thought this would be possible using something
like:
> tapply(SppID, PlotID, nlevels)
BU3F10 BU3F11 BU3F12
5 5 5
however, this outputs the total number of levels for the factor SppID rather
than the number of species in each plot category which would look like:
BU3F10 BU3F11 BU3F12
1 2 4
I understand, from reading the archive, that this occurs because R does not
subset factor levels, but I'm wondering if there's a simple way around this.
Thanks for your help,
Ian Chidister
Environment and Resources
The Nelson Institute for Environmental Studies
University of Wisconsin-Madison, USA
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