MAura,
On Jun 19, 2009, at 7:36 , <mau...@alice.it> <mau...@alice.it> wrote:
I remember JGR installation on SuSE 10.3 as a nightmare that
eventually I overcame with JGR designers' help.
I have installed SuSE 11.1, latest R version and am trying to
install JGR again.
It is still a nightmare.
Well, good Linux distros offer JGR as binaries so it's one-liner to
install it ;). All other distros I use are easy to install even from
sources - SuSE seems is notoriously struggling ...
I have followed the guidelines on
http://jgr.markushelbig.org/JGR_on_Linux.html
I have made sure I have the so R libraries.
I have installed java-1.6.0-sun and its development environment.
Following the on-line guidelines for JGR installation,
the process fails on trying to install "rJava" ... please see all
the messages in the following.
I get the same error if I try to install "rJava" in advance of JGR.
Thank you very much,
Maura
As root:
linux-326k:/home/mauede # sudo R CMD javareconf
Java interpreter : /usr/bin/java
Java version : 1.6.0_0
Java home path : /usr/lib64/jvm/java-1.6.0-openjdk-1.6.0/jre
Java compiler : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/
amd64:$(JAVA_HOME)/../lib/amd64::/usr/java/packages/lib/amd64:/usr/
lib64:/lib64:/lib:/usr/lib
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -L$(JAVA_HOME)/
lib/amd64 -L$(JAVA_HOME)/../lib/amd64 -L -L/usr/java/packages/lib/
amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib -ljvm
JNI cpp flags :
^^^ - it appears that you don't have full JDK installed properly or
it's non-standard location - R cannot find flags needed to compile
JNI. You don't have either of ${JAVA_HOME}/include, ${JAVA_HOME}/../
include, ${JAVA_HOME}/jre/include so you'll need to figure out whether
a) you just didn't install them or b) they are installed in a non-
standard location. The fix for a) is to install them, the fix for b)
is set set them using JAVA_CPPFLAGS when calling javareconf (and
report back to us to see if that's something we can add to R).
Cheers,
Simon
Updating Java configuration in /usr/lib64/R
Done.
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