1) What is the rest of your code ... e.g. that part which sets up the file names and at least the parameters and file access parts of the function cluster_compare?

PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


2) Just a guess in the absence of code.  Does this work:
cluster_compare( myfile <- file.choose(), mclfile <- file.choose() )


--
David

On Jun 18, 2009, at 7:03 AM, Nick Angelou wrote:


Hi all,

I have written a function

cluster_compare(myfile, mclfile)

I called it giving names of files in the working directory (I see them with
dir()). I get

Error in file("myfile", "r") : cannot open the connection
In addition: Warning message:
In file("myfile", "r") :
 cannot open file 'myfile': No such file or directory

I tried even calling the function like that:

myfile <- file.choose()
mclfile <- file.choose()
cluster_compare(myfile, mclfile)

where I interactively select the files. Yet, I get the same error again.
It's quite puzzling. Any advice? (fyi - I'm on Vista)

regards,

Nick

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David Winsemius, MD
Heritage Laboratories
West Hartford, CT

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