Dear Girish, As they are lattice plots, you need to print() them explicitly. It is FAQ 7.22: http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-do-lattice_002ftrellis- graphics-not-work_003f
<<fig=TRUE>>= print(plot(fm1, distance ~ fitted(.) | Subject, abline = c(0,1))) @ ------------------------------------------------------------------------ ---- ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie en kwaliteitszorg / Section biometrics, methodology and quality assurance Gaverstraat 4 9500 Geraardsbergen Belgium tel. + 32 54/436 185 thierry.onkel...@inbo.be www.inbo.be To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey -----Oorspronkelijk bericht----- Van: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] Namens Girish A.R. Verzonden: maandag 1 juni 2009 7:46 Aan: r-help@r-project.org Onderwerp: [R] Sweave:Figures from plot (LME output) not getting generated(pdf or eps) Hi, I seem to be facing a strange problem when I use Sweave for creating a LaTeX document of the R lme() output --- The EPS and PDF figure files get created, but are empty. I have attached a reproducible example below (taken from the R lme() help example). ------------------------------------------------------------------------ ------------ \documentclass[a4paper,10pt]{article} \usepackage{Sweave} \SweaveOpts{keep.source=TRUE} \begin{document} <<>>= fm1 <- lme(distance ~ age, Orthodont, random = ~ age | Subject) @ <<fig=TRUE>>= plot(fm1, distance ~ fitted(.) | Subject, abline = c(0,1)) @ \end{document} ------------------------------------------------------------------------ ------------ I don't seem to face this problem while plotting other objects. Any help is appreciated. Thanks, -Girish =========================== > sessionInfo() R version 2.9.0 (2009-04-17) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States. 1252;LC_MONETARY=English_United States. 1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 attached base packages: [1] grid splines stats graphics grDevices utils datasets methods [9] base other attached packages: [1] RWinEdt_1.8-1 coda_0.13-4 verification_1.29 CircStats_0.2-3 [5] boot_1.2-36 fields_5.02 spam_0.15-4 waveslim_1.6.1 [9] lmtest_0.9-23 zoo_1.5-5 psychometric_2.1 multilevel_2.3 [13] MASS_7.2-46 nlme_3.1-92 languageR_0.953 lme4_0.999375-31 [17] Matrix_0.999375-26 zipfR_0.6-5 lattice_0.17-22 gplots_2.7.0 [21] caTools_1.9 bitops_1.0-4.1 gdata_2.4.2 gtools_2.5.0-1 [25] gmodels_2.14.1 ggplot2_0.8.3 reshape_0.8.3 plyr_0.1.8 [29] proto_0.3-8 doBy_3.9 foreign_0.8-34 car_1.2-14 [33] Design_2.1-2 survival_2.35-4 Hmisc_3.6-0 loaded via a namespace (and not attached): [1] cluster_1.12.0 Formula_0.1-3 kinship_1.1.0-22 plm_1.1-2 sandwich_2.2-1 [6] tools_2.9.0 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Dit bericht en eventuele bijlagen geven enkel de visie van de schrijver weer en binden het INBO onder geen enkel beding, zolang dit bericht niet bevestigd is door een geldig ondertekend document. The views expressed in this message and any annex are purely those of the writer and may not be regarded as stating an official position of INBO, as long as the message is not confirmed by a duly signed document. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
