Nathan, please do not crosspost, it is actually lowers your chances to get a reply. Thanks.
On Tue, Apr 7, 2009 at 10:20 PM, Surendar Swaminathan <surendar.swaminat...@gmail.com> wrote: > Hello Gabor, > > Thank you very much for the reply.I tried working on the code. I have > total of 5 different graphs and Bonpow function in Igraph works for 2 graphs > and for the other it goes out of memory.It is the same case using sparse > matrix. The graphs that did not work for Bonpow function in Igraph does not > work using the sparse.And for one of the graph R crashes. How does it crash? Which operating system do you use? Which R version do you use? Which igraph version do you use? > This is the error I get.Help on this would be great. > > *bonpow.sparse(g)* > > Error: cannot allocate vector of size 3.3 Gb > In addition: Warning messages: > 1: In solve(id - exponent * d, tol = tol) : > Reached total allocation of 1535Mb: see help(memory.size) > 2: In solve(id - exponent * d, tol = tol) : > Reached total allocation of 1535Mb: see help(memory.size) > 3: In solve(id - exponent * d, tol = tol) : > Reached total allocation of 1535Mb: see help(memory.size) > 4: In solve(id - exponent * d, tol = tol) : > Reached total allocation of 1535Mb: see help(memory.size) How many vertices and edges do your graphs have? Can you upload a graph somewhere so that I can reproduce this problem? G. > Nathan > > > On Tue, Apr 7, 2009 at 1:07 AM, Gábor Csárdi <csa...@rmki.kfki.hu> wrote: > >> For the records, the possible solution is here: >> http://igraph.wikidot.com/r-recipes#toc6 >> >> Gabor >> >> On Mon, Apr 6, 2009 at 9:22 PM, Surendar Swaminathan >> <surendar.swaminat...@gmail.com> wrote: >> > Hello All, >> > >> > I have been trying to do bonpow for a while now.Bonpow works for few >> graphs >> > and for few others it goes out of memory. >> > >> > I did see reply to one of the posting Alph Centrality Crashed in Igraph >> > memory error. >> > >> > The solution in the posting was to use sparse matrix. This is the link of >> > the message. >> > >> > http://lists.gnu.org/archive/html/igraph-help/2008-04/msg00071.html >> > I was able to obtain edgelist for the graph and I do not know how to >> convert >> > that to sparse matrix and obtain bonpow. >> > Can someone help me. >> > This is what I tried >> > >> > Summary(g) >> > >> > Vertices: 8047 >> > Edges: 99060 >> > Directed: FALSE >> > No graph attributes. >> > Vertex attributes: name. >> > No edge attributes. >> > I use get.adjacency( graph,Sparse=TR >> > >> > UE) to obtain the sparse matrix.Converted the sparse matrix to graph and >> fed >> > the graph object to bonpow. >> > Can someone help me with this.I know I am making a big mistake but I do >> not >> > know how to solve them. >> > >> > Please find the attached graph object along with this mail. >> > >> > Nathan. >> > >> > ______________________________________________ >> > R-help@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/r-help >> > PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html> >> > and provide commented, minimal, self-contained, reproducible code. >> > >> > >> >> >> >> -- >> Gabor Csardi <gabor.csa...@unil.ch> UNIL DGM >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html> >> and provide commented, minimal, self-contained, reproducible code. >> > > [[alternative HTML version deleted]] > > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > -- Gabor Csardi <gabor.csa...@unil.ch> UNIL DGM ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
