Hi,
thanks. I didn't saw the answer from pgi.
But when I change the settings in R_HOME/etc/Makeconf
the system is still using the old settings.
How can I force R to use the new settings and check it ?
Bye, Peer
Brian D Ripley wrote:
I don't see anything in there that asks for a shared library to be
built. Please check R_HOME/etc/Makeconf: I believe you need
SHLIB_CXXLDFLAGS = -shared
(and I checked, and I do see that in the PGI section of the R-admin
manual: so plese check your other settings too).
(BTW, googling shows
https://www.pgroup.com/userforum/viewtopic.php?p=5170&sid=d3b7c949dc63785a722c1d3488b9440e
and the same answer.)
On Wed, 11 Feb 2009, Dr.Peer-Joachim Koch wrote:
Hi,
we have installed R-2.8.1 using the current pgi compiler (8.0.2) for
AMD64 on a SLES9 system.
When I try to install "Matrix" everything is fine until the last step.
make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD'
pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so
CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o
chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o
dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o
dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o
factorizations.o ldense.o lgCMatrix.o sparseQR.o SPQR.a CHOLMOD.a
COLAMD.a AMD.a -L/usr/local/apps/R/R-2.8.1/lib64/R/lib -lRlapack
-lRblas -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc
-lpgc -lrt -lpthread -lm -pgf90libs
/usr/lib64/crt1.o(.text+0x21): In function `_start':
../sysdeps/x86_64/elf/start.S:109: undefined reference to `main'
CHMfactor.o(.text+0x28): In function `CHMfactor_to_sparse':
/tmp/R.INSTALL.TW3399/Matrix/src/CHMfactor.c:5: undefined reference to
`R_CheckStack'
CHMfactor.o(.text+0xa5):/tmp/R.INSTALL.TW3399/Matrix/src/CHMfactor.c:14:
undefined reference to `Rf_error'
CHMfactor.o(.text+0xe5):/tmp/R.INSTALL.TW3399/Matrix/src/CHMfactor.c:14:
undefined reference to `R_NilValue'
Other modules worked and could be compiled without any problems.
Any idea ??
--
Bye,
Peer
_________________________________________________________
Max-Planck-Institut fuer Biogeochemie
Dr. Peer-Joachim Koch
Hans-Knöll Str.10 Telefon: ++49 3641 57-6705
D-07745 Jena Telefax: ++49 3641 57-7705
--
Mit freundlichem Gruß
Peer-Joachim Koch
_________________________________________________________
Max-Planck-Institut fuer Biogeochemie
Dr. Peer-Joachim Koch
Hans-Knöll Str.10 Telefon: ++49 3641 57-6705
D-07745 Jena Telefax: ++49 3641 57-7705
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
