Dear all:
Does anybody know about label conflicts between xtable and Hmisc? I found a
couple of e-mails similar to this problem but is not clear to me how to get
around the label problem.
The first table(longtable below) is generated with the latex function from
Hmisc but for some reason when I try to hyperlink to it,it takes me to the top
of the document. The second table created with the xtable package(bottom of
document)hyperlinks OK, but if I would create the bottom table first using
xtable and then create the longtable using Hmisc then the hyperlink works OK on
the longtable but not on the other one. Thanks
I'am using Sweave and Miktex, windows XP,R-2.8.1 to generate the document below:
\documentclass[11pt]{article}
\usepackage{amsmath}
\usepackage{floatflt,graphicx,times}
\usepackage[usenames,dvipsnames]{color}
\usepackage{longtable,pdflscape}
\usepackage{rotating}
\usepackage{verbatim}
\usepackage[ps2pdf,
bookmarks=true,
bookmarksnumbered=false,
bookmarksopen=false,
colorlinks=true,
linkcolor=webblue]{hyperref}
\definecolor{webgreen}{rgb}{0, 0.5, 0} % less intense green
\definecolor{webblue}{rgb}{0, 0, 0.5} % less intense blue
\definecolor{webred}{rgb}{0.5, 0, 0} % less intense red
\usepackage[all]{hypcap}
\pdfbookmark[1]{Contents}{table}
\title{BROOD-YEAR 2007 WINTER CHINOOK JUVENILE PRODUCTION}
\author{Felipe D. Carrillo}
\date{January 5, 2009}
\pagestyle{headings}
\parskip 7.2pt
\begin{document}
\setkeys{Gin}{width=1.1\textwidth}
\maketitle
\tableofcontents
The hyperlink of table 1 doesn't work!!!! but the hyperlink of table 2 works OK
\newpage
\listoftables
\listoffigures
\section{Introduction}
\label{sec:introduction}
Winter-run Chinook salmon is one of four distinct "runs" of Chinook salmon
(Oncorhynchus tshawytscha)....
\section{Study Area}
The Sacramento River is the largest river system in California, flowing south
through 600 kilometers (km)...
\section{Methods}
\subsection{Sampling gear}
Sampling was conducted along a transect using four 2.4 m diameter rotary-screw
traps.........
\subsection{Sampling regimes}
In general, rotary traps sampled continuously throughout 24-hour periods and
were serviced once daily.
\subsection{Data collection}
All fish captured were anesthetized, identified to species......
The first table(longtable below) is generated with the latex function from
Hmisc but for some reason when I try to hyperlink to it
takes me to the top of the document. The second table created with the xtable
package(bottom of document)hyperlinks OK, but
If I would create the bottom table first using xtable and then create the
longtable using Hmisc then the hyperlink works OK on the
longtable but not on the other one. Does anybody know about conflicts between
these two packages? I found a couple of e-mails similar to
this problem but is not clear to me how to get around the label problem. Thanks
\newpage
<<tab.R,echo=FALSE,results=tex>>=
library(Hmisc)
x <- matrix(rnorm(1000), ncol = 10)
x.big <- data.frame(x)
latex(x.big,"",label="tab:nice",file="",longtable=TRUE, dec=2,landscape=TRUE,
caption='longtable generated with Hmisc.')
@
\section{Results}
\subsection{Sampling effort}
Weekly sampling effort throughout the 2006 brood-year emigration period was
highly variable and ranged
from 0.21 to 1.00 (0 = 0.74, N = 52 weeks; Table 1). Weekly sampling effort
ranged from 0.21 to 1.00 (0 = 0.73, N = 26 weeks)
between July and December, the period of greatest juvenile winter Chinook
emigration, and 0.21 to 1.00 (0 = 0.75, N = 26 weeks)
during the latter half of the emigration period (Table 1).\\
\subsection{Trap efficiency trials}
Eight mark-recapture trials were conducted using naturally produced fall run
fry sized Chinook
<<tab.RR,echo=F,results=tex>>=
library(xtable)
x <- matrix(rnorm(100), ncol = 10)
ci.table <- data.frame(x)
ci.table <- xtable(x,label='tab:mytable',align="ccccccccccc",caption='Table
created with xtable',digits=0)
print(ci.table,tabular.environment='longtable',include.rownames=FALSE,floating=FALSE)
@
\end{document}
Felipe D. Carrillo
Supervisory Fishery Biologist
Department of the Interior
US Fish & Wildlife Service
California, USA
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