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On Wed, 24 Dec 2008, Sean Zhang wrote:
Dear R-helpers:
I am new to R and would like to seek your expert opinion on installation
tip. Many thanks in advance.
I want to update my R to the newest version and wonder the following two
questions:
Question 1:
How can I install R and its contributed packages in a way so when updating R
in the future, I do NOT need to
re-install contributed packages used by R of last version.
Use a separate library directory. You will need to re-install for updates
to dot-0 releases (e.g. 2.9.0) but update.packages(checkBuilt=TRUE) does
that for you.
Question 2:
Is it an ok-practice to just install all the CRAN packages (i.e.,
install.packages(available.packages()[,1]) ). Does someone do so?
Not a good idea as you already have some, the recommended packages.
install.packages(new.packages()) would be better. And yes, quite a few
sites do things like that, but do bear in mind the costs on the CRAN
servers (we keep a local mirror and install from that).
The reason I ask the second question is that if installing all available
packages does Not consume too much time (say less than 2 hours), too much
computer resource (I have big harddrive, so harddrive is probably not a
concern. I guess computing speed will not be affected but not sure...)
then, I do not need to bother Question 1 and will just install all available
packages when updating R.
It will take more than 2 hours for a source install except for a parallel
install on a very fast machine. For example, the Windows build takes 8
CPU hours
(http://cran.r-project.org/bin/windows/contrib/checkSummaryWin.html) and I
think my x86_64 Linux server takes about 3 elapsed hours and 3GB for the
installed packages. (There is no built-in support for parallel installs,
although some of us have written private versions.)
Many Thanks in advance.
Merry Christmas!
-Sean
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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