Duncan Murdoch wrote:
On 10/23/2008 3:32 PM, Rob James wrote:
odfWeave is throwing up a cryptic error, after successfully processing
a file with a large number of figures (~30) and many \Sexpr{} calls.
The error is (at least to me) cryptic. I am not sure where to look to
correct this problem.
Here's the error:
Post-processing the contents
Error in .Call("RS_XML_Parse", file, handlers, endElementHandlers,
as.logical(addContext), :
attempt to apply non-function
That's a relatively difficult error to get: I think you usually need to
be messing around with expressions to see it. You can also get it in
simpler ways with nonsensical expressions, like
> 1(1)
Error: attempt to apply non-function
I'd say you'll need to do a traceback() to find out where this is coming
from. It's probably also worthwhile to track down those warnings() that
you were told about.
The most likely cause is that one of the elements of the
handlers object is not a function.
The XML parser expects each element that will be called
when a corresponding node is encountered in the XML content
to be a function.
I'd take a look at the value of handlers and see which
of them is not a function and where the list is being
constructed.
(Other) Duncan
Duncan Murdoch
Is there any way to figure out what this means, or where I might look
for the error in the source?
Here's a capture of the associated log. I am running R 2.8 under
Ubuntu 8.04.
Thanks,
> odfWeave("/home/rob/Trauma/Report_2_draft.odt",
"/home/rob/Trauma/Report_2_draft_out.odt")
Copying /home/rob/Trauma/Report_2_draft.odt
Setting wd to /tmp/Rtmp2tlRz0/odfWeave23115040235
Unzipping ODF file using unzip -o Report_2_draft.odt
Archive: Report_2_draft.odt
extracting: mimetype creating:
Configurations2/statusbar/
inflating: Configurations2/accelerator/current.xml creating:
Configurations2/floater/
creating: Configurations2/popupmenu/
creating: Configurations2/progressbar/
creating: Configurations2/menubar/
creating: Configurations2/toolbar/
creating: Configurations2/images/Bitmaps/
inflating: layout-cache inflating:
content.xml inflating: styles.xml
extracting: meta.xml inflating:
Thumbnails/thumbnail.png inflating: settings.xml
inflating: META-INF/manifest.xml
Removing Report_2_draft.odt
Creating a Pictures directory
Pre-processing the contents
Sweaving content.Rnw
Writing to file content_1.xml
Processing code chunks ...
1 : term hide(label=loadData)
d 2 : term verbatim(label=SiteHist)
ate()
3 : term verbatim(label=AgeSex)
4 : term verbatim(label=Sitesex)
5 : term verbatim(label=SiteHeadNeck)
6 : term verbatim(label=SiteFace)
7 : term verbatim(label=SiteChest)
8 : term verbatim(label=SiteAbdomnen)
9 : term verbatim(label=SiteGCS_Eyes)
10 : term verbatim(label=SiteGCS_Verbal)
11 : term verbatim(label=SiteGCS_Motor)
12 : term verbatim(label=SiteGCS_total)
13 : term verbatim(label=SBP)
14 : term verbatim(label=DBP)
15 : term verbatim(label=HR)
16 : term verbatim(label=RESPIRATION)
17 : term verbatim(label=PF_ADMIT)
18 : term verbatim(label=O2_admit)
19 : term verbatim(label=Ph_admit)
20 : term verbatim(label=DEFICIT)
21 : term verbatim(label=lactic_acid)
'content_1.xml' has been Sweaved
Removing content.xml
Post-processing the contents
Error in .Call("RS_XML_Parse", file, handlers, endElementHandlers,
as.logical(addContext), :
attempt to apply non-function
In addition: There were 50 or more warnings (use warnings() to see the
first 50)
> date()
[1] "Thu Oct 23 12:18:18 2008"
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______________________________________________
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PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
