Dear R users,
I am currently writing a R package and to do so I am following the
guidelines in manual 'Writing R extensions'.
In Section 3.1, it is suggested to tidy up the code using a file
containing the following:
options(keep.source = FALSE)
source("myfuns..R")
dump(ls(all = TRUE), file = new.myfuns.R")
I have done this for my own packages and although it runs, I get several
warnings of the type:
Warning message:
In dump(ls(all = TRUE), file = "PermAlgo.R") : deparse may be incomplete
I am clueless as to what this means.
Even if I try to tidy only one function from my code, I get the warning.
E.g. the file lala.R contains only this:
partialHazards <- function(t, v, covArray, betas){ exp( covArray[v,t,]
%*% betas ) }
the file tidylala.R contains:
options(keep.source = FALSE)
source("lala.R")
dump(ls(all = TRUE), file = "newlala.R")
On Linux I run:
R --vanilla < tidylala.R
Then I obtain:
Warning message:
In dump(ls(all = TRUE), file = "newlala.R") : deparse may be incomplete
The file newlala.R looks like this:
`partialHazards` <-
function (t, v, covArray, betas)
{
exp(covArray[v, t, ] %*% betas)
}
What does the warning mean? Can I simply ignore it?
thanks,
MP
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