Hi All:

This was discussed in the R-developers list (see the thread starting at http://tolstoy.newcastle.edu.au/R/e3/devel/ 07/12/0560.html). It has to do with the behavior of sd() when the entire vector is NA. The behavior has changed between 2.6 and 2.7.1 as follows:

Run in Version 2.7.1
> tt<-rep(NA, 10)
> mean(tt, na.rm=T)
[1] NaN
>sd(tt, na.rm=T)
Error in var(x, na.rm=na.rm) : no complete element pairs

Run in Version 2.6.1
> tt<-rep(NA, 10)
> mean(tt, na.rm=T)
[1] NaN
>sd(tt, na.rm=T)
Na

If I understand the discussion, 2.7.1 fails because 'rm=T' removes the NA's so that it is now empty. What I have been unable to find in any of the mail lists is how you are suppose to program this in 2.7.1. when you are looping through a large number of "variables" (we have time series on a grid and are calculating the mean and sd of the time series at each grid point).

Any suggestions much appreciated.

-Roy M.

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Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
1352 Lighthouse Avenue
Pacific Grove, CA 93950-2097

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