Hi, All;
I simply followed the exonmap vignette but came up with an unexpected
error.
Here are what I did:
> library(exonmap)
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: RColorBrewer
Loading required package: RMySQL
Loading required package: DBI
Loading required package: plier
> raw <- read.exon(covdesc='design.csv')
> [EMAIL PROTECTED] <- "exon.pmcdf"
> dat.rma <- rma(raw)
Error in .local(object, ...) : subscript out of bounds
> sessionInfo()
R version 2.7.2 beta (2008-08-16 r46368)
i386-apple-darwin9.4.0
locale:
C
attached base packages:
[1] splines tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] exon.pmcdf_1.1 exonmap_1.6.05 plier_1.8.0
[4] RMySQL_0.6-0 DBI_0.2-4 RColorBrewer_1.0-2
[7] simpleaffy_2.14.05 gcrma_2.12.1 matchprobes_1.12.0
[10] genefilter_1.20.0 survival_2.34-1 affy_1.16.0
[13] preprocessCore_1.0.0 affyio_1.6.1 Biobase_2.0.1
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.0.6 RSQLite_0.6-4 annotate_1.18.0
Thanks in advance;
Tae-Hoon
--
Tae-Hoon Chung
Korea Centers for Disease Control & Prevention (KCDC)
Korea National Institute of Health
Center for Genome Sciences :: Biobank Team
(T) +82-2-380-2252
(F) +82-2-354-1078
(M) +82-10-3511-1012
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