Hi Birgitle, You need to get this right if someone is going to spend their time helping you. Your code doesn't work: You have specified more columns in colClasses than you have in the provided data set.
> TestPart<-read.table("TestPart.txt", header=TRUE,row.names=1,
> na.strings="NA" ,colClasses = Classe81)
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings,
:
line 1 did not have 82 elements
> TestPart<-read.table("TestPart.txt", header=TRUE,row.names=1,
> na.strings="NA")
Warning message:
In scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
number of items read is not a multiple of the number of columns
> length(names(TestPart))
[1] 72
> length(Classe81)
[1] 82
That will never work.
HTH, Mark.
Birgitle wrote:
>
> Sorry if this post should be long but I tried to give you a piece of my
> data to reproduce my error message using hetcor:
>
> Fehler in result$rho : $ operator is invalid for atomic vectors
> Zusätzlich: Warning messages:
> 1: In polychor(x, y, ML = ML, std.err = std.err) :
> 1 row with zero marginal removed
> 2: In polychor(x, y, ML = ML, std.err = std.err) :
> the table has fewer than 2 rows
>
>
> Error in result$rho : $ operator is invalid for atomic vectors
> Additional: Warning message:
> 1: In polychor(x, y, ML = ML, std.err = std.err) :
> 1 row with zero marginal removed
> 2: In polychor(x, y, ML = ML, std.err = std.err) :
> the table has fewer than 2 rows
>
> Use tab delimited data at the end of the post.
> Copy in Texteditor and save as TestPart.txt
>
> Then use the following code
>
> library(methods)
> setClass("of")
> setAs("character", "of", function(from) as.ordered(from))
>
> Classe81<-cclasses <- c(rep("factor", 64), rep("numeric",6), rep ("of",
> 12))
>
> TestPart<-read.table("TestPart.txt", header=TRUE,row.names=1,
> na.strings="NA" ,colClasses = Classe81)
>
> str(TestPart)
>
> library(polycor)
>
> TestPart.hetcor<-hetcor(TestPart, use="complete.obs")
>
> this will produce the above mentioned error message that I can not
> interprete.
>
> Would be great if somebody could help me to solve the problem.
>
> Thanks
>
> B.
>
>
>
>
> 1 2 3 4 7 8 9 10 12
> 13 14 15 16 17 18 19 21 22 23
> 25 27 28 29 30 31 33 34
> 35 36 37 38 39 40 41 42 43 44
> 45 46 47 48 49 50 51 52 53 54
> 55 56 58 59 60
> 61 62 63 64 65 66 67 68 69 70
> 71 72 73 74 75 76 77 78 79 80
> AX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 1 0
> 0 1 1 0 0 0 0 0 1 0
> 0 0 1 0 0 0 0
> 0 1 0 0 0 0 0 0 0 0
> 0 1 1 0 0 1 0 1 25 5
> 9 1 8.5 2.5 3 5 2 2 3 3
> 1 1 1 2 1
> 2
> BX 1 1 0 0 1 0 0 1 NA
> NA NA 0 0 0 0 1 0 0 1
> 0 0 1 0 NA NA NA NA NA NA
> NA
> NA 0 0 0 1 0 NA NA NA NA
> NA NA NA 0 0 0 0 1 1 0
> 0 0 1 1 NA NA 6 1 3.25
> 2.25 5 5 2 2 3 3 1 1 1
> 1 1 1
> CX 1 1 0 0 1 0 0 1 1
> 0 0 0 1 0 1 0 0 1 0
> 1 0 0 0 0 1 1 0 0 0
> 0 0 0 1 0 0 0
> 0 1 0 0 0 0 0 0 0 0
> 1 0 0 0 0 1 0 0 15 3.5
> 6 1 5.5 5.5 5 5 2 2 1 2
> 1 1 1 1
> 2 2
> DX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 0 1
> 0 0 1 0 0 1 0 1 0 0
> 0 1 0 0 0 0 1
> 1 0 0 0 0 0 0 0 0 0
> 1 0 1 0 1 0 1 0 50 17.5
> 7.5 2.5 8.5 5 5 5 2 2 2 3
> 1 1
> 1 1 3 3
> EX 1 0 1 0 1 0 0 1 NA
> NA NA 0 0 0 1 1 0 1 1
> 0 1 0 0 0 0 0 0 1 0
> 0 0 0 1 0
> 0 0 0 0 0 0 1 0 0 0
> 0 0 1 0 1 0 0 0 1 0
> NA NA 14.5 30 13 2.5 3 3 1 1
> 4 4 1
> 1 1 1 1 1
> FX 1 0 1 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 0 1
> 0 1 0 0 0 1 1 1 0 0
> 1 1 0 0 0 1 1
> 1 0 0 0 1 0 0 0 0 0
> 1 0 1 0 1 1 0 0 165 25
> 11.5 15 12 6.5 5 5 1 1 3 3
> 1 1
> 1 1 4 5
> GX 1 0 1 0 1 0 0 1 0
> 0 1 0 0 0 0 1 1 1 0
> 0 1 0 0 0 0 0 1 0 0
> 1 1 0 1 0 0 1
> 0 0 0 0 1 0 0 0 1 0
> 0 0 0 0 1 0 1 0 40 20
> 14.5 9.5 11 10 3 3 1 1 1 3
> 1 1 3
> 4 1 3
> HX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 1 0
> 0 1 0 0 NA NA NA NA NA NA
> NA NA
> NA NA NA NA NA 1 0 0 0 1
> 0 0 0 0 0 0 0 1 1 1
> 0 1 0 70 18.5 1 12.5 7.2 7.2
> 5 5 2 2 3 3 3 3 1 1
> 2 4
> JX 1 0 1 0 1 0 0 1 0
> 0 0 0 0 1 1 0 0 1 0
> 1 0 0 0 0 1 0 1 0 0
> 0 0 0 1 1 0 0
> 0 0 0 0 1 0 0 1 0 0
> 0 0 0 0 0 0 1 0 65 9
> 11 18 4.5 3.75 1 3 2 3 2 2
> 1 1 1
> 1 2 2
> KX 1 0 1 0 1 0 0 1 NA
> NA NA 0 0 1 0 0 0 0 1
> 0 1 0 0 0 0 0 1 1 0
> 0 1 0 0 1
> 1 0 0 1 0 0 0 0 0 0
> 0 0 0 1 0 0 0 1 0 0
> NA NA 4.25 4.5 2.1 1.6 3 3 2 2
> 2 3
> 1 1 1 2 1 1
> LX 1 0 0 1 1 0 0 1 0
> 1 0 0 0 0 1 0 0 0 1
> 1 0 0 0 0 0 0 0 1 1
> 0 0 1 1 0 0 0
> 0 1 0 0 0 0 0 0 1 0
> 0 1 0 0 0 0 1 0 80 32.5
> 13 4 8.5 5.25 2 3 3 3 3 3
> 1 1
> 1 1 3 4
> MX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 1 1 0 1 0
> 0 1 0 0 0 0 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 1 1 0 0
> 0 0 0 0 0 0 0 1 45 7.5
> 14 1 11 5.5 3 4 2 2 3 3
> 1 1 1 1
> 2 3
> NX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 1 0 0 1 0
> 0 1 1 0 0 0 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 0 0
> 0 0 0 0 0 0 0 1 42.5 12.5
> 17.5 1 11 NA 5 5 2 2 3 3
> 1 1
> 1 1 1 2
> OX 1 1 0 0 1 0 0 1 NA
> NA NA 0 0 0 0 1 0 0 1
> 0 1 0 1 0 1 1 0 0 0
> 0 0 0 0 0
> 1 0 0 0 0 0 1 0 0 0
> 1 0 0 1 0 0 0 0 0 1
> NA NA 25 1 25 NA 3 4 1 2
> 3 3 1 1 3
> 3 1 1
> PX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 1 1
> 0 0 1 0 0 1 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 1 0
> 0 0 0 0 0 0 0 1 42.5 11.5
> 21.5 2 25 NA 4 5 2 2 3 3
> 1 1
> 1 2 1 2
> QX 1 1 0 0 1 0 0 1 NA
> NA NA 0 0 0 1 1 0 0 1
> 1 0 0 0 0 1 1 1 0 0
> 0 0 0 0 0
> 1 0 0 1 0 0 1 0 0 1
> 1 0 0 0 0 0 0 0 0 1
> NA NA 27.5 1.5 19 NA 3 3 2 2
> 3 3 1
> 1 1 2 1 1
> RX 1 1 0 0 1 0 0 1 NA
> NA NA 0 0 0 0 1 0 1 0
> 0 0 1 0 0 0 1 0 0 0
> 0 0 0 0 0
> 1 0 0 0 0 0 1 0 0 1
> 1 0 0 0 0 0 0 0 0 1
> NA NA 30 1 24 NA 3 4 2 2
> 3 3 1 1 3
> 3 1 1
> SX 1 1 0 0 1 0 0 1 0
> 0 1 0 0 0 1 1 0 1 0
> 1 0 1 0 0 0 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 0 0
> 0 0 0 0 0 0 0 1 47.5 20
> 22.5 2 15 NA 5 5 2 2 3 3
> 1 1 1
> 1 2 2
> TX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 1 0 0 1 0
> 1 0 0 0 0 0 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 0 0
> 0 0 0 0 0 0 0 1 40 11
> 15 1.5 11.5 NA 5 5 2 3 3 3
> 1 1 1
> 1 2 2
> UX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 0 1
> 1 0 0 0 0 1 1 0 0 0
> 0 0 0 0 0 1 0
> 0 1 0 0 1 0 0 1 1 0
> 0 0 0 0 0 0 0 1 65 35
> 39 2.5 20 NA 3 4 2 2 3 3
> 1 1 2 2
> 1 2
> VX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 1 1 0 0 1
> 1 0 0 0 0 0 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 1 0
> 0 0 0 0 0 0 0 1 85 10.5
> 19.5 1.5 13.5 NA 5 5 2 3 3 3
> 1
> 1 2 2 2 2
> WX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 1 1
> 1 0 0 0 0 0 1 1 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 0 0
> 0 0 0 0 0 0 0 1 155 18
> 30 2 17.5 NA 5 5 2 3 3 3
> 1 1 1
> 2 2 3
> XX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 1 0 0
> 0 0 0 0 0 0 0 1 90 10.5
> 25 1 19 NA 5 5 2 2 3 3
> 1 1 1 1
> 2 3
> YX 1 1 0 0 1 0 0 1 NA
> NA NA 0 0 0 0 1 0 0 1
> 1 1 1 0 0 0 1 0 1 0
> 0 0 0 0 0
> 1 0 0 1 0 0 1 0 0 1
> 1 0 0 0 0 0 0 0 0 1
> NA NA 30 2.5 20.25 NA 3 3 2 2
> 3 3
> 1 1 2 2 1 1
> ZX 1 1 0 0 1 0 0 1 0
> 0 0 0 0 0 0 1 0 0 1
> 0 0 1 0 0 0 0 0 1 0
> 0 0 1 1 0 0 0
> 0 0 0 0 1 0 0 0 0 0
> 1 0 0 0 0 0 0 1 105 25
> 37.5 1 37.5 2.25 5 5 2 3 3 3
> 1
> 1 1 1 2 2
> AY 0 1 1 0 1 1 1 0 1
> 0 0 0 0 0 0 1 0 1 1
> 0 0 1 0 1 0 1 0 0 0
> 0 0 0 0 0 1 1
> 0 1 0 0 0 0 0 0 0 0
> 0 1 1 0 0 1 0 0 85 6.5
> 11.5 3 11.5 3.25 5 5 2 2 3 4
> 1
> 1 1 2 2 4
> BY 0 0 1 0 1 0 1 0 0
> 1 0 0 0 0 0 1 0 1 0
> 1 0 1 0 0 1 0 1 0 0
> 0 0 0 1 1 0 0
> 0 1 0 0 1 0 0 0 0 0
> 1 1 0 0 0 0 1 0 38 10
> 6.5 8 3 2.5 4 5 2 2 2 3
> 1 1 1 2
> 2 3
> CY 0 1 0 0 0 1 1 0 1
> 0 0 0 1 1 1 1 0 1 0
> 0 1 0 0 1 1 0 0 0 0
> 0 1 0 1 1 1 1
> 1 1 0 0 0 0 0 0 0 0
> 1 0 1 0 0 1 0 0 15 3.5
> 5 1.5 3.25 3.5 5 5 2 3 2 2
> 1 1
> 1 1 2 2
> DY 0 1 0 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 0 0 1 0 NA NA NA NA NA NA
> NA NA
> NA NA NA NA NA 1 0 0 0 0
> 0 0 0 0 1 0 0 1 0 0
> 1 0 0 70 20 NA NA 5.5 3.5 5
> 5
> 3 3 3 3 3 3 1 1 9 9
> EY 0 0 0 1 1 0 0 1 1
> 0 0 0 0 0 0 1 0 1 0
> 0 1 0 0 0 1 0 0 0 0
> 0 0 0 1 0 0 0
> 0 0 0 0 1 0 0 0 0 0
> 0 0 1 0 0 0 1 0 20 7
> 8 25 5.5 3.25 3 3 3 3 3 3
> 1 1 1 1
> 2 2
> FY 0 0 0 1 1 0 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 0 1 0 0 0 1 0 1 0 0
> 0 0 0 0 1 1 1
> 1 0 0 0 1 0 0 0 0 0
> 1 0 1 0 0 0 1 0 150 25
> 13 24 11.5 4.5 5 5 3 3 4 4
> 1 1
> 1 1 5 6
> GY 0 0 0 1 1 0 0 1 1
> 0 0 0 0 0 0 1 0 0 1
> 0 1 0 0 0 1 0 1 0 0
> 0 0 0 1 0 0 0
> 0 0 0 0 1 0 0 0 1 0
> 0 0 0 0 0 0 1 0 50 15
> 12.5 17.5 8.5 5.75 3 3 3 3 2 3
> 1
> 1 1 1 2 3
> HY 0 1 0 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 1 0
> 0 1 0 0 0 1 0 0 0 0
> 0 0 0 0 1 0 1
> 1 0 0 0 0 0 0 0 0 0
> 0 0 1 0 0 0 1 0 110 15
> 9.5 7.5 11 3.35 5 5 3 3 4 4
> 3 3
> 1 1 4 5
> JY 0 0 0 1 1 0 0 1 1
> 1 0 0 1 1 0 0 0 1 0
> 1 0 0 0 0 0 1 0 1 0
> 0 0 0 1 0 0 0
> 0 1 0 0 0 1 0 0 0 0
> 0 1 0 0 0 0 1 0 60 11.5
> 10 30 3.25 3.75 3 3 2 2 1 1
> 1
> 1 1 1 2 3
> KY 0 0 0 1 1 0 0 1 NA
> NA NA 1 0 1 0 0 1 0 1
> 0 1 1 0 1 1 0 1 0 0
> 0 0 0 0 0
> 1 0 0 1 1 0 0 0 0 0
> 0 0 0 1 0 0 0 1 0 1
> NA NA 6.5 23 2.25 1 1 2 2 2
> 3 3 1
> 1 2 2 2 2
> LY 0 0 1 0 1 0 0 1 0
> 1 0 0 0 0 1 0 0 1 0
> 1 1 0 0 0 1 0 1 0 0
> 0 0 0 1 0 0 0
> 0 1 0 0 0 0 0 0 0 0
> 1 1 0 0 0 1 0 0 52.5 20
> 11 5 6.25 4.25 2 2 2 2 3 3
> 1 1
> 1 1 2 4
> MY 0 1 1 0 0 1 0 1 0
> 1 0 0 1 1 0 0 0 0 1
> 0 1 0 0 0 0 0 1 1 0
> 0 0 0 1 0 0 0
> 0 0 1 0 0 1 0 0 0 0
> 1 0 0 0 0 1 0 0 60 15
> 3 15 1.5 1.25 5 5 2 2 2 2
> 1 1 1
> 1 6 6
> NY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 1 1 0 1 1
> 0 1 1 0 0 0 1 1 0 0
> 1 0 0 1 0 0 0
> 0 0 0 0 1 0 0 0 0 0
> 1 0 0 0 0 1 0 0 50 14
> 3.75 25 2.85 2.4 5 5 2 2 1 2
> 1 1
> 1 1 5 6
> OY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 0 0 1 0 0 0 0 1 0 0
> 1 0 0 1 0 1 0
> 0 0 0 0 1 0 0 0 0 0
> 0 1 0 0 0 1 0 0 45 14
> 4 15 2.75 1.75 5 5 2 2 2 3
> 1 1 2
> 3 5 5
> PY 0 0 1 1 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 0 0 1 0 0 0 0 1 0 0
> 1 0 0 1 1 1 0
> 0 0 0 0 1 0 0 0 0 0
> 0 1 0 0 0 1 0 1 60 18.5
> 3.75 15 2.75 2.1 5 5 2 2 2 3
> 1
> 1 1 2 4 6
> QY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 1 1 1 0 0 1
> 1 0 1 0 0 1 1 1 0 0
> 0 0 0 0 1 1 0
> 0 0 0 0 1 0 0 0 0 0
> 1 1 0 0 0 0 0 1 290 90
> 8.5 22.5 2.75 2.25 5 5 2 2 2 3
> 1 1 1 2 7 7
> RY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 0 0 1 0 0 0 0 1 0 0
> 1 0 0 1 1 1 0
> 0 0 0 0 1 0 0 0 0 0
> 0 1 0 0 0 0 1 0 55 15.5
> 7.5 14 7 2.25 5 5 2 2 3 3
> 1 1
> 2 3 2 4
> SY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 1 0 0 0 0 0 0 0 0 0
> 1 0 0 1 0 0 0
> 0 0 0 0 1 0 0 0 0 0
> 1 1 0 0 0 0 1 0 55 20
> 5.5 30 4.5 2.5 5 5 2 2 3 3
> 1 1 1
> 1 4 5
> TY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 0 1 1 0 0 0 0 1 0 0
> 1 0 0 1 1 0 0
> 0 0 0 0 1 0 0 0 0 0
> 1 0 0 0 0 1 0 0 40 15
> 4.5 25 2.75 1.75 5 5 2 2 3 3
> 1 1
> 1 1 4 6
> UY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 1 1 0 0 1
> 1 0 0 0 0 0 1 1 0 0
> 1 0 0 1 0 1 0
> 0 1 0 1 1 0 0 0 0 0
> 1 1 0 0 0 0 1 0 200 27.5
> 6.5 25 2.45 2.25 5 5 2 2 2 3
> 1 1 1 2 7 7
> VY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 1 1 0 0 1
> 1 0 1 0 0 1 0 1 0 0
> 1 0 0 1 1 1 0
> 0 0 0 0 1 0 0 0 0 0
> 0 1 1 0 0 0 1 0 135 17.5
> 5.5 17.5 2.75 2.25 5 5 2 2 2
> 3 1 1 1 2 5 7
> WY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 0 1 0 0 1
> 1 0 0 0 0 1 0 1 0 0
> 1 1 0 1 0 1 1
> 0 0 0 0 1 0 0 0 0 0
> 0 1 0 0 0 1 0 1 240 35
> 5.5 14 3.25 2.75 5 5 2 2 2 3
> 1
> 1 1 2 7 7
> XY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 1 1 0 0 1
> 1 0 0 0 0 0 1 0 0 0
> 1 0 0 1 0 0 0
> 0 0 0 1 1 0 0 0 0 0
> 0 1 0 0 0 1 0 0 175 27.5
> 4 10.5 2.5 1.875 5 5 2 2 2 2
> 1 1 1 1 6 7
> YY 0 0 1 0 0 1 0 1 0
> 1 0 0 0 0 1 1 0 0 1
> 1 0 1 0 0 1 1 1 0 0
> 0 0 0 0 0 1 0
> 0 0 0 0 1 0 0 0 0 0
> 1 1 0 0 0 0 0 1 230 42.5
> 5.6 25 2.5 2.5 5 5 2 2 2 2
> 1
> 1 1 2 5 7
> ZY 0 1 0 0 0 1 0 1 0
> 1 0 0 0 0 1 0 0 1 0
> 0 0 1 0 0 0 0 0 0 0
> 0 1 0 0 0 0 1
> 1 0 0 0 0 0 0 0 0 0
> 0 0 1 0 0 0 0 1 115 35
> 10.5 20 7.5 6.5 5 5 1 1 3 3
> 1 1
> 1
>
>
>
>
>
>
>
>
>
>
>
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--
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