Dear Ivan,
Thank you very much.
Indeed, I missed the download button. The csv file seems to contain all
the mutations in a usable format.
Sincerely,
Leonard
On 1/24/2023 11:29 PM, Ivan Krylov wrote:
On Tue, 24 Jan 2023 22:26:34 +0200
Leonard Mada via R-help <r-help@r-project.org> wrote:
The data on the NCBI page "Explore in SARS-CoV-2 Variants Overview"
seems very difficult to download:
https://www.ncbi.nlm.nih.gov/activ
E.g.: (in the lower-left corner, but impossible to copy)
NSP1: S135R
NSP13: R392C
The page has a "download" button, which requests
https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/activ/?report=download_lineages
and offers to save it as "lineages.csv".
I think that the information you're looking for is available if you
feed this URL to read.csv() and look at the aa_definition column.
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