I am trying this URL: " https://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162562/suppl/GSE162562_RAW.tar "
but it is not giving me any file On Mon, Aug 23, 2021 at 11:42 PM Andrew Simmons <akwsi...@gmail.com> wrote: > Hello, > > > I don't think you need to use a system command directly, I think > 'utils::untar' is all you need. I tried the same thing myself, something > like: > > > URL <- "https://exiftool.org/Image-ExifTool-12.30.tar.gz"; > FILE <- file.path(tempdir(), basename(URL)) > > > utils::download.file(URL, FILE) > utils::untar(FILE, exdir = dirname(FILE)) > > > and it makes a folder "Image-ExifTool-12.30". It seems to work perfectly > fine in Windows 10 x64 build 19042. Can you send the specific file (or > provide a URL to the specific file) that isn't working for you? > > On Mon, Aug 23, 2021 at 12:53 PM Anas Jamshed <anasjamshed1...@gmail.com> > wrote: > >> I have the file GSE162562_RAW. First I untar them >> by untar("GSE162562_RAW.tar") >> then I am running like: >> system("gunzip ~/Desktop/GSE162562_RAW/*.gz") >> >> >> This is running fine in Linux but not in windows. What changes I >> should make to run this command in windows as well >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
