Thank you, it seems the solution is to define the nodes in groupOTU using a list of vectors.
On Thu, Nov 12, 2020 at 12:15 PM Rui Barradas <ruipbarra...@sapo.pt> wrote: > Hello, > > You should post a reproducible example like the posting guide asks you to. > In the mean time, are you looking for [1], section Group Clades, by > package ggtree author? It even seems to be the package vignette. > > [1] > > https://bioconductor.riken.jp/packages/3.8/bioc/vignettes/ggtree/inst/doc/treeManipulation.html > > > Hope this helps, > > Rui Barradas > > Às 21:59 de 11/11/20, April Ettington escreveu: > > I've been using groupOTU to color paraphyletic clades in my tree based on > > lists of tips, but I have multiple clades I want to highlight. Is there > > some way to use ggplot to indicate multiple paraphyletic clades? > > > > Thank you > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
