Why did you specify a different order parameter if that is not what you
wanted?
Suggest you look more carefully at the parameters of the code you are
copying and pasting and also at the help page, ?corrplot .
--
David.
On 11/6/20 6:08 AM, Ana Marija wrote:
> sorry forgot to attach the plot.
>
> On Fri, Nov 6, 2020 at 8:07 AM Ana Marija <sokovic.anamar...@gmail.com> wrote:
>> Hello
>>
>> I have data like this:
>>
>>> head(my_data)
>> subjects DIABDUR HBA1C ESRD SEX AGE PHENO C1 C2
>> 1 fam0110_G110 38 9.4 1 2 51 2 -0.01144980 0.002661140
>> 2 fam0113_G113 30 12.5 1 2 40 2 -0.00502052 -0.000929061
>> 3 fam0114_G114 23 8.4 2 2 45 2 -0.00251578 -0.003450950
>> 4 fam0117_G117 37 9.0 2 2 46 2 -0.00704917 -0.000573325
>> 5 fam0119_G119 22 9.4 1 1 46 1 0.00263433 0.001002370
>> 6 fam0119_G120 NA NA 1 1 71 1 -0.00354795 -0.002045940
>> C3 C4 C5 C6 C7 C8
>> 1 0.006028150 -0.00176795 -0.00148375 0.004543550 -0.006272170 -0.00535077
>> 2 -0.000453402 -0.00192162 0.00416229 0.007868230 -0.001957670 -0.00473148
>> 3 -0.001680860 -0.00620438 -0.00235092 0.000672831 -0.000278318 0.00647337
>> 4 0.001436740 0.00155568 -0.00556147 -0.000386401 -0.006885350 0.00135539
>> 5 -0.007396920 0.00326229 0.00355575 -0.011149400 0.009156510 0.00120833
>> 6 0.004532050 0.00869862 -0.00113207 0.002244520 -0.002119220 0.00657587
>> C9 C10
>> 1 0.00328111 -0.00113515
>> 2 -0.00495790 0.00320201
>> 3 0.00208591 -0.00874752
>> 4 -0.00967934 0.00607760
>> 5 0.00611030 0.00876190
>> 6 -0.00990661 0.00635349
>>
>> I am plotting it with:
>>
>> library(dplyr)
>> library(magrittr)
>> library(corrplot)
>> d=my_data %>% data.frame %>% set_rownames(.$subjects) %>% select(-subjects)
>> res <- cor(d, use = "complete.obs")
>> pdf("correlation.pdf")
>> corrplot(res, type = "upper", order = "hclust",
>> tl.col = "black", tl.srt = 45)
>> dev.off()
>>
>> and I am getting the plot in attach. How to make it so that my
>> variables are shown on the plot in the order they are in my_data data
>> frame?
>>
>> Thanks
>> Ana
>>
>> ______________________________________________
>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
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