Hi the list,
Back on an old problem. I thaught that was ok, but it is still not
working on my computer.
I write a toy package called packClassic. R CMD build packClassic works
fine.
When I run R CMD CHECK packClassic, I get
--- 8< ---------------
* checking for unstated dependencies in R code ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
--- 8< ---------------
I gess that my configuration is correct since on an other package (a
real one), I get no problem.
The program is called "progClassic.R". Obviouly, is in a directorie
called \packClassic\R\
The doc are in man, a data base is in data and some test are in tests
Here are the codes, the DESCRIPTION and NAMESPACE, then the file
00install.out and 00check.log :
I also put the package (since R CMD build works fine) on
http:\\christophe.genolini.free.fr/packClassic_1.0.tar.gz
http:\\christophe.genolini.free.fr/packClassic_1.0.zip
Does someone know what is wrong ?
Christophe
---- 8< --------- packClassic.R ----------------
######################################################
### ProgClassic.R ###
######################################################
userA <- function(x){x+1}
privateA <- function(x){x+2}
.userB <- function(x){x+10}
.privateB <- function(x){x+20}
userC <- function(x){userA(privateA(x))}
privateC <- function(x){.userB(.privateB(x))}
--- 8< ---------- testsPackClassic.R----------------------------
##########################################
### Nom du programme : testClassique.R ###
##########################################
load("../data/dn.Rda")
source("../R/progClassic.R")
userA(1)
privsateA(2)
.userB(3)
.privateB(4)
userC(5)
privateC(6)
--- 8< ------------ dn.Rda ----------------------
dn <- data.frame(age=c(1,2,4,8,12))
save(dn,file=dn.Rda")
--- 8< ----------- DESCRIPTION -------------
Package:packClassic
Type: Package
Title: A (Not So) Short Introduction To S4
Version: 1.0
Date: 2008-07-16
Author: Christophe Genolini
Maintainer: <[EMAIL PROTECTED]>
Description: This package is a toy example used to illustrate the
tutorial A (Not So) Short Introduction to S4.
License: GPL (>=2)
LazyLoad: ys
--- 8< --------------- NAMESPACE --------------
export("userA",
".userB",
"userC"
)
--- 8< -------- man ----------------
dn.Rd
packClassic-internal.Rd
packClassic-package.Rd
userAC.Rd
--- 8< ------------- 00install.out ----------------------
installing R.css in
C:/DOCUME~1/CHRIST~1/MESDOC~1/DOCSAR~1/R/TUTORI~1/PACKCL~1.RCH
---------- Making package packClassic ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'packClassic'
Formats: text html latex example chm
dn text html latex example
packClassic-internal text html latex
packClassic-package text html latex example
userAC text html latex example
adding MD5 sums
* DONE (packClassic)
--- 8< ----------------- 00check.log ------------------
* using log directory 'C:/Documents and Settings/Christophe/Mes
documents/Docs articles polys résumés/R/tutorial S4/packClassic.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'packClassic/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'packClassic' version '1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'packClassic' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies
... OK
* checking for unstated dependencies in R code ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
Erreur : aucun package nommé 'packClassic' n'existe
Séquence d'appel :
2: stop(txt, domain = NA)
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose =
FALSE)
Exécution arrêtée
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
* checking Rd files ... OK
* checking Rd cross-references ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> Rd_aliases -> .find.package
Exécution arrêtée
* checking for missing documentation entries ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
* checking Rd \usage sections ... WARNING
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
Functions with \usage entries need to have the appropriate \alias entries,
and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
Erreur dans .find.package(package, lib.loc) :
aucun package nommé 'packClassic' n'existe
Calls: <Anonymous> -> .find.package
Exécution arrêtée
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating packClassic-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'packClassic-Ex.R' failed.
--- 8< -----------------------
c> I find the problem: the name of my base directory (the
c> one that contain R, man and test) was not the same than
c> the name of the package...
Aha!
c> I thaught this was allowed, I guess I was wrong.
It has been documented to be allowed; and it has been, but
in some circumstances, R CMD check gave wrong warnings, as you
found.
I had found and fixed this buglet on May 22, both for R-devel
and R-patched (which will become R 2.7.1 ...)
Could you try 'R-patched' and confirm that the problem is
solved?
Regards,
Martin
c> Christophe
>>>>>>> "c" == cgenolin <[EMAIL PROTECTED]> on Tue, 03
>>>>>>> Jun 2008 09:55:15 +0200 writes:
>>
>> >> provide commented, minimal, self-contained,
>> reproducible code. >> Please do -- both --
>>
c> Sorry... Usualy, I do...
>>
c> --- 8< ------------ userA <- function(x)x+1 privateA <-
c> function(x)x+2 .userB <- function(x)x+10 .privateB <-
c> function(x)x+20 userC <- function(x)userA(privateA(x))
c> privateC <- function(x).userB(.privateB(x)) userD <-
c> function(x)userA(.userB(x)) privateD <-
c> function(x)privateA(.privateB(x)) --- 8< ------------
>>
>> If I execute these in an empty R session, and do
>> package.skeleton("EXpkg") system("R CMD check EXpkg")
>>
>> I can NOT see the problem you describe below. Probably
>> you'd rather should upload the <pkg>.tar.gz to a public
>> place, to make your problem reproducible.
>>
>> Martin
>>
>> >>>>>>> "c" == cgenolin <[EMAIL PROTECTED]> >>>>>>>
>> on Tue, 03 Jun 2008 00:32:13 +0200 writes:
>> >>
c> Hi the list. I got a probleme with R CMD check. I run a
c> package.skeleton on a very simple code (four toy
c> function, no probleme with the R CMD build). But on the R
c> CMD check packClassique, I get :
>> >>
c> * checking for unstated dependencies in R code
c> ... WARNING Erreur dans .find.package(package, lib.loc) :
c> aucun package nommé 'packClassique' n'est trouvé Calls:
c> <Anonymous> -> .find.package Excecution hated
c> [French=Exécution arrêtée]
>> >>
c> See the information on DESCRIPTION files in the chapter
c> 'Creating R packages' of the 'Writing R Extensions'
c> manual. * checking S3 generic/method consistency
c> ... WARNING Erreur dans .find.package(package, lib.loc) :
c> aucun package nommé 'packClassique' n'est trouvé Calls:
c> <Anonymous> -> .find.package Exécution arrêtée
>> >>
c> And so on.
>> >>
c> Any idea on what is wrong ?
>> >>
>> >> No.
>> >>
c> Christophe
>> >>
c> ______________________________________________
c> R-help@r-project.org mailing list
c> https://stat.ethz.ch/mailman/listinfo/r-help
>> >>
c> PLEASE do read the posting guide
>> >> http://www.R-project.org/posting-guide.html
c> and provide commented, minimal, self-contained,
c> reproducible code.
>> >>
>> >> Please do -- both --
>> >>
>> >> Martin
>> >>
>>
>>
>>
c> ----------------------------------------------------------------
c> Ce message a ete envoye par IMP, grace a l'Universite
c> Paris 10 Nanterre
>>
>>
>>
______________________________________________
c> R-help@r-project.org mailing list
c> https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do
c> read the posting guide
c> http://www.R-project.org/posting-guide.html and provide
c> commented, minimal, self-contained, reproducible code.
______________________________________________
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
