Dear R users, I would like to introduce my R package, admixr, which provides an interface for performing population genetic analyses using the ADMIXTOOLS suite of command-line utilities: https://cran.r-project.org/package=admixr.
ADMIXTOOLS (https://www.genetics.org/content/192/3/1065) is a very popular software in population genetics. However, because each of its command-line programs requires configuration files specific to each analysis, it is very cumbersome to use. The admixr package wraps around ADMIXTOOLS utilities and presents them as if they were simple R functions. It achieves this by creating all intermediate files needed by ADMIXTOOLS and extracting relevant statistics from generated output files, which all happens under the hood. Extended tutorial and overview of the package can be found at: https://bodkan.net/admixr/articles/tutorial.html Any feedback is welcome at: https://github.com/bodkan/admixr/issues Best regards, Martin Petr -- www.bodkan.net [[alternative HTML version deleted]] _______________________________________________ R-packages mailing list r-packa...@r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
