HI Rui,
Thank you so much for getting back to me!
I did implement your idea (see attach):
ax.11.text <- element_text(size = 10)
ay.11.text <- element_text(size = 10)
p<-ggplot(data=toplot, aes(x=cat, y=props)) +
geom_bar(stat="identity",width=0.5, fill="steelblue")+
geom_errorbar(aes(ymin=props-1.96*ses, ymax=props+1.96*ses), width=.1,
position=position_dodge(.9)) +
geom_signif(comparisons=list( c("All eQTL", "eQTL from 103 genes"),
c("All SNPs", "eQTL from 103 genes")),
y_position=c(0.065, 0.07), tip_length=0, annotation=c("p
= 0.0012", "p = 0.0023")) +
scale_y_continuous(breaks=seq(0,.06,by=.01)) +
xlab("") + ylab("Proportion p-values < 0.05") +
theme_classic()+
theme(panel.grid.major.x = element_line(size = 0.1, color = "grey"),
panel.grid.major.y = element_blank(),
panel.grid.minor = element_blank(),axis.text.x =
ax.11.text,axis.text.y=ay.11.text
)
p
I was wondering is there is any way to decrease the amount of white
spaces around the bars?
Thanks
Ana
On Thu, Jan 9, 2020 at 10:41 AM Ana Marija <sokovic.anamar...@gmail.com> wrote:
>
> HI Rui,
>
> Thank you so much for getting back to me!
> I did implement your idea (see attach):
>
> ax.11.text <- element_text(size = 10)
> ay.11.text <- element_text(size = 10)
> p<-ggplot(data=toplot, aes(x=cat, y=props)) +
> geom_bar(stat="identity",width=0.5, fill="steelblue")+
> geom_errorbar(aes(ymin=props-1.96*ses, ymax=props+1.96*ses), width=.1,
> position=position_dodge(.9)) +
>
> geom_signif(comparisons=list( c("All eQTL", "eQTL from 103 genes"),
> c("All SNPs", "eQTL from 103 genes")),
> y_position=c(0.065, 0.07), tip_length=0, annotation=c("p
> = 0.0012", "p = 0.0023")) +
> scale_y_continuous(breaks=seq(0,.06,by=.01)) +
> xlab("") + ylab("Proportion p-values < 0.05") +
> theme_classic()+
> theme(panel.grid.major.x = element_line(size = 0.1, color = "grey"),
> panel.grid.major.y = element_blank(),
> panel.grid.minor = element_blank(),axis.text.x =
> ax.11.text,axis.text.y=ay.11.text
> )
> p
>
> I was wondering is there is any way to decrease the amount of white
> spaces around the bars?
>
> Thanks
> Ana
>
> On Wed, Jan 8, 2020 at 2:58 PM Rui Barradas <ruipbarra...@sapo.pt> wrote:
> >
> > Hello,
> >
> > Maybe
> >
> >
> > theme(panel.grid.major.x = element_line(size = 0.1, color = "grey"),
> > panel.grid.major.y = element_blank(),
> > panel.grid.minor = element_blank()
> > )
> >
> >
> >
> > Note that if you remove the y axis grid you must set the x axis grid
> > explicitly.
> >
> > Hope this helps,
> >
> > Rui Barradas
> >
> > Às 18:52 de 08/01/20, Ana Marija escreveu:
> > > Hello,
> > >
> > > I have this plot in attach. I was wondering how can I change my
> > > plotting code in order to remove these gray horizontal background
> > > lines but keep these two vertical lines? These two vertical lines
> > > don't need to be gray, can be any other type of lines but they must be
> > > at the same place. Also how can I make these two bars narrower?
> > >
> > > library("ggplot2")
> > > p<-ggplot(data=toplot, aes(x=cat, y=props)) +
> > > geom_bar(stat="identity", fill="steelblue")+
> > > geom_errorbar(aes(ymin=props-1.96*ses, ymax=props+1.96*ses), width=.2,
> > > position=position_dodge(.9)) +
> > >
> > > geom_signif(comparisons=list( c("All eQTL", "eQTL from 103 genes"),
> > > c("All SNPs", "eQTL from 103 genes")),
> > > y_position=c(0.065, 0.07), tip_length=0, annotation=c("p
> > > = 0.0012", "p = 0.0023")) +
> > > scale_y_continuous(breaks=seq(0,.06,by=.01)) +
> > > xlab("") + ylab("Proportion p-values < 0.05") +
> > > theme_minimal()
> > > p
> > >
> > >
> > > ______________________________________________
> > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > > https://stat.ethz.ch/mailman/listinfo/r-help
> > > PLEASE do read the posting guide
> > > http://www.R-project.org/posting-guide.html
> > > and provide commented, minimal, self-contained, reproducible code.
> > >
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
