I thought it successfully loaded after library(Biobase) but after
implementing your suggested I got the following....
Error in library(Biobase) : there is no package called ‘Biobase’
So to download it would I try to rerun with Debug? This is an option given
as part of the return
On Wed, Jul 17, 2019 at 4:37 PM Martin Morgan <mtmorgan.b...@gmail.com>
wrote:
> Are you remembering to attach the Biobase package to your R session?
>
> > AnnotatedDataFrame()
> Error in AnnotatedDataFrame() :
> could not find function "AnnotatedDataFrame"
> > suppressPackageStartupMessages({ library(Biobase) })
> > AnnotatedDataFrame()
> An object of class 'AnnotatedDataFrame': none
>
> Biobase is a Bioconductor package, so support questions should more
> appropriately go to https://support.bioconductor.org
>
> Martin
>
> On 7/17/19, 4:20 PM, "R-help on behalf of Spencer Brackett" <
> r-help-boun...@r-project.org on behalf of spbracket...@saintjosephhs.com>
> wrote:
>
> Good evening,
>
> I downloaded the Biobase package in order to utilize the ExpressionSet
> and
> other features hosted there to examine annotations for probeset data,
> which
> I seek to visualize. I currently have pre-analyzed object located in my
> environment containing said probeset info, along with gene id and
> location.
> After experimenting with the following approaches, I'm am at a loss
> for as
> to why the AnnotatedDataFrame function is not being recognized by R.
>
> ##Example of some of my attempts and their respective error messages##
>
> >AnnotatedDataFrame()
> Error in AnnotatedDataFrame() : could not find function
> "AnnotatedDataFrame"
>
> signature(object="assayData")
> object "assayData"
> > annotatedDataFrameFrom("assayData", byrow=FALSE)
> Error in annotatedDataFrameFrom("assayData", byrow = FALSE) :
> could not find function "annotatedDataFrameFrom"
>
> >as(data.frame, "AnnotatedDataFrame")
> Error in as(data.frame, "AnnotatedDataFrame") :
> no method or default for coercing “function” to “AnnotatedDataFrame”
>
> Best,
>
> Spencer
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
>
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
