Thanks Petr Bernard Sent from my iPhone so please excuse the spelling!"
> On Mar 28, 2019, at 2:26 AM, PIKAL Petr <petr.pi...@precheza.cz> wrote: > > Hallo Bernard > > I did not follow all emails in this thread but it seems to me that your > request is similar to Bioconductor packages dealing with Flow Cytometry data. > > Especially flowViz package is designed to visualise such data. > > Cheers > Petr > > >> -----Original Message----- >> From: R-help <r-help-boun...@r-project.org> On Behalf Of Bernard McGarvey >> Sent: Wednesday, March 27, 2019 9:55 PM >> To: Paul Murrell <p...@stat.auckland.ac.nz>; John Kane >> <jrkrid...@gmail.com> >> Cc: R. Help Mailing List <r-help@r-project.org> >> Subject: Re: [R] [FORGED] Re: Quantile Density Contours >> >> If I understand correctly the ContourLines function gives you the contour >> lines >> when you put in the data. But before this I need to data to put into that >> function. I think this is something like a 2D CDF of the data that then >> leads to >> the 2D quantiles but I am not 100% sure. What I am basically looking for is >> the >> 2D curve that encloses say 95% of the data in a similar fashion to a 1D >> quantile >> where the quantile represents the value that x% of the data is below. I think >> what I am looking for is the 2D bivariate version of the 1D quantile plot >> (where >> the quantile value is plotted vs the % value). >> >> I hope this makes some sense. >> >> Bernard McGarvey >> >> >> Director, Fort Myers Beach Lions Foundation, Inc. >> >> >> Retired (Lilly Engineering Fellow). >> >> >>> On March 27, 2019 at 3:57 PM Paul Murrell <p...@stat.auckland.ac.nz> >> wrote: >>> >>> >>> >>> Are you looking for the contourLines() function ? >>> >>> Paul >>> >>>> On 28/03/19 8:37 AM, Bernard McGarvey wrote: >>>> John, I have attached a pdf of the plot. Hopefully you can read this. >>>> >>>> If I understand correctly, this plot is basically the 2-D version of the >>>> 1-D >> quantile plot. >>>> >>>> Thanks >>>> >>>> Bernard McGarvey >>>> >>>> >>>> Director, Fort Myers Beach Lions Foundation, Inc. >>>> >>>> >>>> Retired (Lilly Engineering Fellow). >>>> >>>> >>>>> On March 27, 2019 at 7:44 AM John Kane <jrkrid...@gmail.com> wrote: >>>>> >>>>> >>>>> The figure did not get through. Perhaps try a pdf? >>>>> >>>>> On Tue, 26 Mar 2019 at 13:41, Bernard McGarvey >>>>> <mcgarvey.bern...@comcast.net> wrote: >>>>>> >>>>>> I want to see if I can reproduce the plot below in R. If I >>>>>> understand it correctly, i takes my bivariate data and creates >>>>>> quantile density contours. My interpretation of these contours is >>>>>> that they enclose a certain % of the total data. I am using the >>>>>> bkde2D function in library KernSmooth which gives density values >>>>>> that can be plotted on a contour plot but I would like the curves >>>>>> that enclose a given % of the data, if that is possible >>>>>> >>>>>> >>>>>> Thanks >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> Bernard McGarvey >>>>>> >>>>>> Director, Fort Myers Beach Lions Foundation, Inc. >>>>>> >>>>>> Retired (Lilly Engineering Fellow). >>>>>> >>>>>> >>>>>> ______________________________________________ >>>>>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>> PLEASE do read the posting guide >>>>>> http://www.R-project.org/posting-guide.html >>>>>> and provide commented, minimal, self-contained, reproducible code. >>>>> >>>>> >>>>> >>>>> -- >>>>> John Kane >>>>> Kingston ON Canada >>>>> >>>>> ______________________________________________ >>>>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>> PLEASE do read the posting guide >>>>> http://www.R-project.org/posting-guide.html >>>>> and provide commented, minimal, self-contained, reproducible code. >>> >>> -- >>> Dr Paul Murrell >>> Department of Statistics >>> The University of Auckland >>> Private Bag 92019 >>> Auckland >>> New Zealand >>> 64 9 3737599 x85392 >>> p...@stat.auckland.ac.nz >>> http://www.stat.auckland.ac.nz/~paul/ >> >> ______________________________________________ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting- >> guide.html >> and provide commented, minimal, self-contained, reproducible code. > Osobní údaje: Informace o zpracování a ochraně osobních údajů obchodních > partnerů PRECHEZA a.s. jsou zveřejněny na: > https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information about > processing and protection of business partner’s personal data are available > on website: https://www.precheza.cz/en/personal-data-protection-principles/ > Důvěrnost: Tento e-mail a jakékoliv k němu připojené dokumenty jsou důvěrné a > podléhají tomuto právně závaznému prohláąení o vyloučení odpovědnosti: > https://www.precheza.cz/01-dovetek/ | This email and any documents attached > to it may be confidential and are subject to the legally binding disclaimer: > https://www.precheza.cz/en/01-disclaimer/ > ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
