Dear Paul and WHP, My guess: Paul apparently has loaded the mice package after the mi package. Both packages have complete() functions, but for objects of different classes -- "mids" in the case of mice. Consquently, complete() in the mice package is shadowing complete() in the mi package.
The solution is not to load both packages unless you actually need to, load mi after mice (though then other similar problems might surface), or invoke mi::complete() explicitly. I hope this helps, John ----------------------------------------------------------------- John Fox Professor Emeritus McMaster University Hamilton, Ontario, Canada Web: https://socialsciences.mcmaster.ca/jfox/ > -----Original Message----- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Bill Poling > Sent: Thursday, August 30, 2018 8:42 AM > To: Paul Bernal <paulberna...@gmail.com>; r-help@r-project.org > Subject: Re: [R] Obtaining Complete Dataset with Imputed Values > > Good morning Paul. > > I am unfamiliar with the package you are using but I have been working > through the tutorial for this purpose using finalfit, if that is any help. > > Cheers > > WHP > > http://www.datasurg.net/2018/08/29/five-steps-for-missing-data-with- > finalfit/ > > > From: R-help <r-help-boun...@r-project.org> On Behalf Of Paul Bernal > Sent: Friday, August 24, 2018 2:57 PM > To: r-help@r-project.org > Subject: [R] Obtaining Complete Dataset with Imputed Values > > Dear friends, hope all is well with you, > > I am working with package mi for data inputation. Currently working with R > version 3.5.0 (64-bit). > > Say my data is defined as dat, and I do the following: > > datimputations <- mi(dat[2:5], n.iter=50) completedat <- > complete(datimputations) > > After using the complete function, I get the following error message: > > Error in complete(datimputations, m = 1) : 'data' not of class 'mids' > > How can I retrieve the processed dataframe (along with the imputed values)? > > Here is my dput() for you to see > > > dput(head(dat,100)) > structure(list(TransitDate = structure(c(496990800, 499669200, 502261200, > 504939600, 507618000, 510037200, 512715600, 515307600, 517986000, > 520578000, 523256400, 525934800, 528526800, 531205200, 533797200, > 536475600, 539154000, 541573200, 544251600, 546843600, 549522000, > 552114000, 554792400, 557470800, 560062800, 562741200, 565333200, > 568011600, 570690000, 573195600, 575874000, 578466000, 581144400, > 583736400, 586414800, 589093200, 591685200, 594363600, 596955600, > 599634000, 602312400, 604731600, 607410000, 610002000, 612680400, > 615272400, 617950800, 620629200, 623221200, 625899600, 628491600, > 631170000, 633848400, 636267600, 638946000, 641538000, 644216400, > 646808400, 649486800, 652165200, 654757200, 657435600, 660027600, > 662706000, 665384400, 667803600, 670482000, 673074000, 675752400, > 678344400, 681022800, 683701200, 686293200, 688971600, 691563600, > 694242000, 696920400, 699426000, 702104400, 704696400, 707371200, > 709963200, 712641600, 715320000, 717912000, 720590400, 723182400, > 725860800, 728539200, 730958400, 733636800, 736232400, 738910800, > 741502800, 744181200, 746859600, 749451600, 752130000, 754722000, > 757400400), class = c("POSIXct", "POSIXt"), tzone = ""), Transits = c(14L, > 14L, > 13L, 10L, 11L, 14L, 14L, 14L, 16L, 6L, 8L, 6L, 6L, 7L, 7L, 9L, 7L, 9L, 3L, > 12L, 7L, > 8L, 10L, 9L, 10L, 11L, 9L, 9L, 5L, 11L, 12L, 7L, 12L, 10L, 9L, 13L, 7L, 7L, > 8L, 4L, > 4L, 7L, 5L, 7L, 7L, 6L, 9L, 4L, 7L, 9L, 5L, 5L, 10L, 6L, 6L, 13L, 6L, 7L, > 10L, 7L, 8L, > 5L, 6L, 7L, 6L, 9L, 8L, 10L, 9L, 9L, 12L, 5L, 9L, 6L, 7L, 10L, 10L, 9L, 14L, > 14L, 15L, > 14L, 16L, 17L, 18L, 11L, 15L, 14L, 8L, 13L, 10L, 9L, 12L, 8L, 12L, 10L, 11L, > 10L, > 9L, 10L), CargoTons = c(154973L, 129636L, 136884L, 86348L, 109907L, > 154506L, 144083L, 152794L, 124861L, 60330L, 65221L, 61718L, 53997L, > 83536L, 63218L, 98222L, 54719L, 98470L, 18263L, 104255L, 62869L, 62523L, > 75344L, 81476L, 92818L, 87457L, 85231L, 77897L, 57699L, 96989L, 109361L, > 59799L, 91116L, 82241L, 74251L, 124361L, 68751L, 61719L, 68017L, 37760L, > 32513L, 56359L, 51333L, 80859L, 75852L, 65760L, 96043L, 38820L, 63202L, > 102647L, 49104L, 53482L, 121305L, 71795L, 76704L, 146097L, 73047L, > 68557L, 110642L, 77616L, 97767L, 52059L, 58658L, 66350L, 69303L, 76013L, > 91909L, 108445L, 94454L, 101249L, 112131L, 56290L, 118342L, 70618L, > 64783L, 112839L, 120506L, 94243L, 130768L, 133643L, 146321L, 140736L, > 147234L, 158953L, 189888L, 93819L, 130021L, 130124L, 55088L, 114783L, > 95184L, 82205L, 80321L, 65422L, 98933L, 93713L, 98417L, 97210L, 88464L, > 94659L), RcnstPCUMS = c(229914L, 214547L, 215890L, 158695L, 173125L, > 222533L, 212490L, 222125L, 266913L, 94268L, 112967L, 95480L, 87654L, > 108996L, 97973L, 139247L, 93817L, 133197L, 40020L, 169749L, 102590L, > 112121L, 140241L, 122989L, 144592L, 144979L, 123748L, 123249L, 70081L, > 155218L, 168096L, 104743L, 163384L, 142648L, 129188L, 183170L, 99299L, > 99873L, 111648L, 55890L, 59183L, 95568L, 72550L, 104562L, 100478L, > 92665L, 130625L, 54786L, 105900L, 135833L, 70932L, 73247L, 149632L, > 94317L, 87926L, 181989L, 92778L, 107097L, 153246L, 105175L, 126393L, > 81976L, 95518L, 109019L, 95370L, 140492L, 125795L, 157978L, 138424L, > 138160L, 180320L, 78757L, 135860L, 85921L, 114847L, 151965L, 152561L, > 132841L, 204839L, 209567L, 224436L, 210209L, 227143L, 245968L, 264969L, > 158648L, 222251L, 194335L, 111618L, 189643L, 137438L, 124953L, 163155L, > 107633L, 164525L, 135102L, 152072L, 126636L, 121008L, 137824L), TotalToll > = c(420742L, 392621L, 395078L, 290411L, 316818L, 407235L, 388856L, > 406488L, 482774L, 172510L, 206729L, 174728L, 160406L, 199462L, 179290L, > 254822L, 171685L, 243750L, 73236L, 310640L, 187739L, 205181L, 249438L, > 225069L, 264603L, 265311L, 226458L, 225545L, 128248L, 284048L, 296023L, > 184934L, 298992L, 261045L, 236414L, 335201L, 181717L, 182767L, 204315L, > 102278L, 108304L, 174889L, 132766L, 191348L, 183874L, 169576L, 239043L, > 100258L, 212859L, 273024L, 142573L, 147226L, 300760L, 189577L, 176731L, > 365797L, 186483L, 215264L, 308024L, 211401L, 254049L, 164771L, 191991L, > 219128L, 191693L, 282388L, 252847L, 317535L, 278232L, 277701L, 356022L, > 158301L, 273078L, 172701L, 230842L, 305449L, 306647L, 267010L, 406202L, > 421229L, 451116L, 422520L, 456557L, 494395L, 582202L, 350612L, 491174L, > 429480L, 239858L, 419111L, 303737L, 276146L, 360572L, 237868L, 358627L, > 298575L, 336079L, 279865L, 267427L, 304591L)), row.names = c(NA, 100L), > class = "data.frame") > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org<mailto:R-help@r-project.org> mailing list -- To > UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r- > help<https://stat.ethz.ch/mailman/listinfo/r-help> > PLEASE do read the posting guide http://www.R-project.org/posting- > guide.html<http://www.R-project.org/posting-guide.html> > and provide commented, minimal, self-contained, reproducible code. > > Confidentiality Notice This message is sent from Zelis. ...{{dropped:15}} > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting- > guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
