On Wed, May 23, 2018 at 2:27 PM, Kevin E. Thorpe <kevin.tho...@utoronto.ca> wrote: > I suspect the main difficulty the OP is having is building R with shlib > support.
apt-get update apt-get build-dep r-base wget https://cran.r-project.org/src/base/R-3/R-3.5.0.tar.gz tar -xvf R-3.5.0.tar.gz cd R-3.5.0 ./configure --enable-R-shlib make also works fine here. FWIW, I'm starting with the ubuntu:latest docker image and going from there. Best, Ista > > Steve, can you build from source without the --enable-R-shlib flag on > configure? > > Kevin > > > On 05/23/2018 01:58 PM, Ista Zahn wrote: >> >> On Tue, May 22, 2018 at 6:47 PM, Steve Gutreuter <sgutreu...@gmail.com> >> wrote: >>> >>> I would love to hear from anyone who has successfully built 3.5.0 under >>> Ubuntu 18.04 (Bionic Beaver). >> >> >> This is the wrong list, see R-sig-debian. That said, >> >> apt-get update >> apt-get build-dep r-base >> wget https://cran.r-project.org/src/base/R-3/R-3.5.0.tar.gz >> tar -xvf R-3.5.0.tar.gz >> cd R-3.5.0 >> ./configure >> make >> ./bin/R >> >> works for me. >> >> --Ista >> My attempts have failed, including: >>> >>> >>> export LDFLAGS="$LDFLAGS -fPIC" >>> export CXXFLAGS="$CXXFLAGS -fPIC" >>> export CFLAGS="$CFLAGS -fPIC" >>> ./configure --enable-R-shlib --prefix=/usr/lib/R/3.5.0 >>> >>> #### Configure completes normally without errors or warnings >>> >>> make >>> >>> #### make fails, always with lines like: >>> /usr/bin/x86_64-linux-gnu-ld: ../appl/dtrsl.o: relocation R_X86_64_32 >>> against `.rodata' can not be used when making a shared object; >>> recompile with -fPIC >>> /usr/bin/x86_64-linux-gnu-ld: attrib.o: relocation R_X86_64_PC32 >>> against symbol `R_NilValue' can not be used when making a shared >>> object; recompile with -fPIC >>> /usr/bin/x86_64-linux-gnu-ld: final link failed: Bad value >>> collect2: error: ld returned 1 exit status >>> Makefile:177: recipe for target 'libR.so' failed >>> make[3]: *** [libR.so] Error 1 >>> make[3]: Leaving directory '/home/steve/src/R/R-3.5.0/src/main' >>> Makefile:135: recipe for target 'R' failed >>> >>> How does one set the -fPIC flag? >>> >>> I have never had trouble compiling under Mint, which is based on >>> Ubuntu. >>> >>> Thanks! >>> Steve >>> > > > -- > Kevin E. Thorpe > Head of Biostatistics, Applied Health Research Centre (AHRC) > Li Ka Shing Knowledge Institute of St. Michael's Hospital > Assistant Professor, Dalla Lana School of Public Health > University of Toronto > email: kevin.tho...@utoronto.ca Tel: 416.864.5776 Fax: 416.864.3016 > > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
