> On Nov 1, 2017, at 9:09 AM, Amany Abdel-Karim <[email protected]> wrote:
>
> Hello,
>
> Thank you for your response. I need to install RankTail package since it
> contains the beta binomial distribution, CDF and inverse CDF in the usual
> form which I need to use. However rmutil package contain unusual forms for
> these functions. So it is easier for me to deal with the forms are contained
> in RankTail.
>
> I tried to install bioconductor package, using the following commands but I
> still got the following errors:
>
>
> (1) I tried biocLite() and then library ("TailRank"), I got the following
> errors.
It appears you failed to follow the full instructions which were to execute:
source("https://bioconductor.org/biocLite.R";)
biocLite()
The first line creates the biocLite function within your workspace.
--
David.
>
>> biocLite()
> Error in biocLite() : could not find function "biocLite"
>> library("TailRank")
> Loading required package: oompaBase
> Error: package or namespace load failed for �TailRank� in loadNamespace(i,
> c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
> there is no package called �Biobase�
> In addition: Warning messages:
> 1: package �TailRank� was built under R version 3.4.2
> 2: package �oompaBase� was built under R version 3.4.2
>
>
>
> (2) I tried to write the command biocLite(), then biocLite("TailRank"), I got
> the following errors:
>
>> biocLite()
> Error in biocLite() : could not find function "biocLite"
>> biocLite("ilRank")
> Error in biocLite("ilRank") : could not find function "biocLite"
>> biocLite()
> Error in biocLite() : could not find function "biocLite"
>> biocLite("TailRank")
> Error in biocLite("TailRank") : could not find function "biocLite"
>
>
>
>
>>
>
>
>
>
> Also, I checked under packages on the right side of the R window and I found
> TailRank , Description is Tail-Rank statistic, and version is 3.1.3. So, I
> tried to write the following code in the console window to check if the
> package works:
>
>> N<-20
>> u<-3
>> v<-10
>> p<-u/u+v
>> x<-0:N
>
>> yy<-dbb(x,N,u,v)
>
>
> I got the following error:
> Error in dbb(x, N, u, v) : could not find function "dbb"
>
>
>
>
>>
>
>
>
> I am confused because if the package TailRank is already there, why the
> pervious code does not work to calculate dbb (x,N,u,v) and I got error? If I
> do not have the package, would you please let me know the right commands I
> should write in the script window to install TaiRank because the commands I
> used (which I mentioned at the beginning of the email did not work and gave
> errors). I appreciate your help since I am a new user of R.
>
>
> Amany
>
>
>
> ________________________________
>
> From: Eric Berger <[email protected]>
> Sent: Wednesday, November 1, 2017 2:42 AM
> To: MCGUIRE, Rhydwyn
> Cc: Amany Abdel-Karim; [email protected]
> Subject: Re: [R] beta binomial distribution installation
>
> Hi,
> I did a quick search for other packages that provide the beta binomial
> distribution and found "rmutil".
>
>> install.packages("rmutil")
>
> The package has the CDF (pbetabinom) and inverse CDF (qbetabinom) among other
> functions.
>
> HTH,
> Eric
>
>
>
> On Wed, Nov 1, 2017 at 7:50 AM, MCGUIRE, Rhydwyn
> <[email protected]<mailto:[email protected]>> wrote:
> Hi there,
>
> It looks like you also need the bioconductor package biobase, I found
> instructions for downloading that package here:
> www.bioconductor.org/install<http://www.bioconductor.org/install>
>
> Good luck.
>
> Cheers,
> Rhydwyn
>
> -----Original Message-----
> From: R-help
> [mailto:[email protected]<mailto:[email protected]>] On
> Behalf Of Amany Abdel-Karim
> Sent: Wednesday, 1 November 2017 2:13 PM
> To: [email protected]<mailto:[email protected]>
> Subject: [R] beta binomial distribution installation
>
> Hello,
>
> I tried to install package TailRank using the command install.packages
> (RankTail) and library (TailRank) but I got the following errors. So, how can
> I install TaiRank in Rstudio to have se beta-binomial distribution, CDF and
> inverse CDG of beta-binomal?
>
> The commands I used are:
>
>> install.packages("TailRank")
>
> Installing package into C:/Users/stator-guest/Documents/R/win-library/3.4
>
> (as lib is unspecified)
>
> Warning in install.packages :
>
> dependency Biobase is not available
>
> trying URL
> 'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_3.1.3.zip'
>
> Content type 'application/zip' length 331270 bytes (323 KB)
>
> downloaded 323 KB
>
>
>
> package TailRank successfully unpacked and MD5 sums checked
>
>
>
> The downloaded binary packages are in
>
>
> C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\downloaded_packages
>
>> library(TailRank)
>
> Error: package or namespace load failed for TailRank in loadNamespace(i,
> c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
>
> there is no package called Biobase
>
> In addition: Warning message:
>
> package TailRank was built under R version 3.4.2
>
>
>
>
> [[alternative HTML version deleted]]
>
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