Note also that this is not the best place to ask questions about installation on Ubuntu -- please post any future Ubuntu-specific questions to the r-sig-debian mailing list. Subscription info at https://stat.ethz.ch/mailman/listinfo/r-sig-debian
The tidyverse suite of packages gennerally installs just fine on Ubuntu Zesty. How did you install R? If you didn't follow the instructions at https://cran.r-project.org/bin/linux/ubuntu/ I suggest uninstalling and re-installing as described there. Make sure you install r-base-dev? Ubuntu zesty comes with gcc6, which is fine for compiling R packages. What does "gcc --version" say? You will also need some additional dependencies, including libxml2-dev, libcurl4-openssl-dev, and libssl-dev, according to https://stackoverflow.com/questions/43592316/warning-in-install-packages-installation-of-package-tidyverse-had-non-zero-e#43649793 Best, Ista On Thu, Aug 17, 2017 at 5:26 AM, Jocelyn Ireson-Paine via R-help <r-help@r-project.org> wrote: > I'm running Ubuntu 17.04 and R 3.4.1. I installed the latter yesterday, so > I presume it's the latest version. I want to install Tidyverse, which I've > spent many happy hours with under Windows. But when I do > install.packages("tidyverse") , I get errors about unrecognized command > line options to gcc. These start when the install hits the colorspace and > munsell packages. I'll show an example at the end of this post. > > I've not found anyone else who had exactly that problem on Ubuntu 17.04. > But posts from people with similar problems suggest that my gcc might be a > version that's too old to recognise the options -fstack-protector-strong > and -Wdate-time. > > Possible work-arounds that I've thought of: > > 1) Find an older version of Tidyverse that doesn't need those compiler > options. > > 2) Upgrade my Ubuntu's gcc so that whichever one Tidyverse needs becomes > the default. But I don't know whether that would nuke other software on my > machine that expects an older gcc. And I don't know exactly what software > the installer expects, so I'd have to keep installing different gccs until > I found one that worked. > > (A suggestion: it would be excellent if the installer could detect such > errors, then fetch and install needed software for itself. If it can't do > that, couldn't it at least tell me which version it wants, instead of > making me deduce it from the compiler options it's using?) > > 3) Install a new gcc just for Tidyverse, and somehow play with paths to > fool the installer into calling it. Perhaps by following the advice in > https://askubuntu.com/questions/466651/how-do-i-use-the-latest-gcc-on-ubuntu > . But that sounds risky. > > 4) Change operating systems? I know Tidyverse works on Windows straight out > of the box. Maybe it's not designed to work on Ubuntu. Anyone know? > > Here's an install that failed: > R version 3.4.1 (2017-06-30) -- "Single Candle" > Copyright (C) 2017 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. > >> install.packages("tidyverse") > Installing package into ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4’ > (as ‘lib’ is unspecified) > also installing the dependencies ‘colorspace’, ‘munsell’, ‘plyr’, ‘psych’, > ‘reshape2’, ‘bindrcpp’, ‘Rcpp’, ‘digest’, ‘scales’, ‘curl’, ‘openssl’, > ‘cellranger’, ‘stringi’, ‘selectr’, ‘tidyselect’, ‘broom’, ‘dplyr’, > ‘forcats’, ‘ggplot2’, ‘haven’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, > ‘purrr’, ‘readr’, ‘readxl’, ‘stringr’, ‘tibble’, ‘rvest’, ‘tidyr’, ‘xml2’ > > trying URL 'https://cran.rstudio.com/src/contrib/colorspace_1.3-2.tar.gz' > Content type 'application/x-gzip' length 293433 bytes (286 KB) > ================================================== > downloaded 286 KB > > trying URL 'https://cran.rstudio.com/src/contrib/munsell_0.4.3.tar.gz' > Content type 'application/x-gzip' length 97244 bytes (94 KB) > ================================================== > downloaded 94 KB > > trying URL 'https://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz' > Content type 'application/x-gzip' length 392451 bytes (383 KB) > ================================================== > downloaded 383 KB > > trying URL 'https://cran.rstudio.com/src/contrib/psych_1.7.5.tar.gz' > Content type 'application/x-gzip' length 3219737 bytes (3.1 MB) > ================================================== > downloaded 3.1 MB > > trying URL 'https://cran.rstudio.com/src/contrib/reshape2_1.4.2.tar.gz' > Content type 'application/x-gzip' length 34688 bytes (33 KB) > ================================================== > downloaded 33 KB > > trying URL 'https://cran.rstudio.com/src/contrib/bindrcpp_0.2.tar.gz' > Content type 'application/x-gzip' length 8089 bytes > ================================================== > downloaded 8089 bytes > > trying URL 'https://cran.rstudio.com/src/contrib/Rcpp_0.12.12.tar.gz' > Content type 'application/x-gzip' length 2421289 bytes (2.3 MB) > ================================================== > downloaded 2.3 MB > > trying URL 'https://cran.rstudio.com/src/contrib/digest_0.6.12.tar.gz' > Content type 'application/x-gzip' length 120337 bytes (117 KB) > ================================================== > downloaded 117 KB > > trying URL 'https://cran.rstudio.com/src/contrib/scales_0.4.1.tar.gz' > Content type 'application/x-gzip' length 57703 bytes (56 KB) > ================================================== > downloaded 56 KB > > trying URL 'https://cran.rstudio.com/src/contrib/curl_2.8.1.tar.gz' > Content type 'application/x-gzip' length 409743 bytes (400 KB) > ================================================== > downloaded 400 KB > > trying URL 'https://cran.rstudio.com/src/contrib/openssl_0.9.6.tar.gz' > Content type 'application/x-gzip' length 1239339 bytes (1.2 MB) > ================================================== > downloaded 1.2 MB > > trying URL 'https://cran.rstudio.com/src/contrib/cellranger_1.1.0.tar.gz' > Content type 'application/x-gzip' length 63857 bytes (62 KB) > ================================================== > downloaded 62 KB > > trying URL 'https://cran.rstudio.com/src/contrib/stringi_1.1.5.tar.gz' > Content type 'application/x-gzip' length 3645872 bytes (3.5 MB) > ================================================== > downloaded 3.5 MB > > trying URL 'https://cran.rstudio.com/src/contrib/selectr_0.3-1.tar.gz' > Content type 'application/x-gzip' length 42098 bytes (41 KB) > ================================================== > downloaded 41 KB > > trying URL 'https://cran.rstudio.com/src/contrib/tidyselect_0.1.1.tar.gz' > Content type 'application/x-gzip' length 18670 bytes (18 KB) > ================================================== > downloaded 18 KB > > trying URL 'https://cran.rstudio.com/src/contrib/broom_0.4.2.tar.gz' > Content type 'application/x-gzip' length 1388242 bytes (1.3 MB) > ================================================== > downloaded 1.3 MB > > trying URL 'https://cran.rstudio.com/src/contrib/dplyr_0.7.2.tar.gz' > Content type 'application/x-gzip' length 692952 bytes (676 KB) > ================================================== > downloaded 676 KB > > trying URL 'https://cran.rstudio.com/src/contrib/forcats_0.2.0.tar.gz' > Content type 'application/x-gzip' length 95288 bytes (93 KB) > ================================================== > downloaded 93 KB > > trying URL 'https://cran.rstudio.com/src/contrib/ggplot2_2.2.1.tar.gz' > Content type 'application/x-gzip' length 2213308 bytes (2.1 MB) > ================================================== > downloaded 2.1 MB > > trying URL 'https://cran.rstudio.com/src/contrib/haven_1.1.0.tar.gz' > Content type 'application/x-gzip' length 184056 bytes (179 KB) > ================================================== > downloaded 179 KB > > trying URL 'https://cran.rstudio.com/src/contrib/httr_1.3.0.tar.gz' > Content type 'application/x-gzip' length 147567 bytes (144 KB) > ================================================== > downloaded 144 KB > > trying URL 'https://cran.rstudio.com/src/contrib/jsonlite_1.5.tar.gz' > Content type 'application/x-gzip' length 1096810 bytes (1.0 MB) > ================================================== > downloaded 1.0 MB > > trying URL 'https://cran.rstudio.com/src/contrib/lubridate_1.6.0.tar.gz' > Content type 'application/x-gzip' length 317672 bytes (310 KB) > ================================================== > downloaded 310 KB > > trying URL 'https://cran.rstudio.com/src/contrib/modelr_0.1.1.tar.gz' > Content type 'application/x-gzip' length 83629 bytes (81 KB) > ================================================== > downloaded 81 KB > > trying URL 'https://cran.rstudio.com/src/contrib/purrr_0.2.3.tar.gz' > Content type 'application/x-gzip' length 126170 bytes (123 KB) > ================================================== > downloaded 123 KB > > trying URL 'https://cran.rstudio.com/src/contrib/readr_1.1.1.tar.gz' > Content type 'application/x-gzip' length 233793 bytes (228 KB) > ================================================== > downloaded 228 KB > > trying URL 'https://cran.rstudio.com/src/contrib/readxl_1.0.0.tar.gz' > Content type 'application/x-gzip' length 1936302 bytes (1.8 MB) > ================================================== > downloaded 1.8 MB > > trying URL 'https://cran.rstudio.com/src/contrib/stringr_1.2.0.tar.gz' > Content type 'application/x-gzip' length 94095 bytes (91 KB) > ================================================== > downloaded 91 KB > > trying URL 'https://cran.rstudio.com/src/contrib/tibble_1.3.3.tar.gz' > Content type 'application/x-gzip' length 91511 bytes (89 KB) > ================================================== > downloaded 89 KB > > trying URL 'https://cran.rstudio.com/src/contrib/rvest_0.3.2.tar.gz' > Content type 'application/x-gzip' length 1597137 bytes (1.5 MB) > ================================================== > downloaded 1.5 MB > > trying URL 'https://cran.rstudio.com/src/contrib/tidyr_0.7.0.tar.gz' > Content type 'application/x-gzip' length 368687 bytes (360 KB) > ================================================== > downloaded 360 KB > > trying URL 'https://cran.rstudio.com/src/contrib/xml2_1.1.1.tar.gz' > Content type 'application/x-gzip' length 244643 bytes (238 KB) > ================================================== > downloaded 238 KB > > trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.1.1.tar.gz' > Content type 'application/x-gzip' length 23452 bytes (22 KB) > ================================================== > downloaded 22 KB > > * installing *source* package ‘colorspace’ ... > ** package ‘colorspace’ successfully unpacked and MD5 sums checked > ** libs > gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c colorspace.c -o colorspace.o > gcc: error: unrecognized command line option '-fstack-protector-strong' > gcc: error: unrecognized command line option '-Wdate-time' > /usr/lib/R/etc/Makeconf:159: recipe for target 'colorspace.o' failed > make: *** [colorspace.o] Error 1 > ERROR: compilation failed for package ‘colorspace’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/colorspace’ > Warning in install.packages : > installation of package ‘colorspace’ had non-zero exit status > * installing *source* package ‘psych’ ... > ** package ‘psych’ successfully unpacked and MD5 sums checked > ** R > ** data > *** moving datasets to lazyload DB > ** inst > ** preparing package for lazy loading > Error : objects ‘rmnorm’, ‘sadmvn’, ‘dmnorm’ are not exported by > 'namespace:mnormt' > ERROR: lazy loading failed for package ‘psych’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/psych’ > Warning in install.packages : > installation of package ‘psych’ had non-zero exit status > * installing *source* package ‘Rcpp’ ... > ** package ‘Rcpp’ successfully unpacked and MD5 sums checked > ** libs > g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o > g++: error: unrecognized command line option '-fstack-protector-strong' > g++: error: unrecognized command line option '-Wdate-time' > /usr/lib/R/etc/Makeconf:168: recipe for target 'Date.o' failed > make: *** [Date.o] Error 1 > ERROR: compilation failed for package ‘Rcpp’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/Rcpp’ > Warning in install.packages : > installation of package ‘Rcpp’ had non-zero exit status > * installing *source* package ‘digest’ ... > ** package ‘digest’ successfully unpacked and MD5 sums checked > ** libs > gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o > gcc: error: unrecognized command line option '-fstack-protector-strong' > gcc: error: unrecognized command line option '-Wdate-time' > /usr/lib/R/etc/Makeconf:159: recipe for target 'aes.o' failed > make: *** [aes.o] Error 1 > ERROR: compilation failed for package ‘digest’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/digest’ > Warning in install.packages : > installation of package ‘digest’ had non-zero exit status > * installing *source* package ‘curl’ ... > ** package ‘curl’ successfully unpacked and MD5 sums checked > Package libcurl was not found in the pkg-config search path. > Perhaps you should add the directory containing `libcurl.pc' > to the PKG_CONFIG_PATH environment variable > No package 'libcurl' found > Package libcurl was not found in the pkg-config search path. > Perhaps you should add the directory containing `libcurl.pc' > to the PKG_CONFIG_PATH environment variable > No package 'libcurl' found > Using PKG_CFLAGS= > Using PKG_LIBS=-lcurl > ------------------------- ANTICONF ERROR --------------------------- > Configuration failed because libcurl was not found. Try installing: > * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc) > * rpm: libcurl-devel (Fedora, CentOS, RHEL) > * csw: libcurl_dev (Solaris) > If libcurl is already installed, check that 'pkg-config' is in your > PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' > -------------------------------------------------------------------- > ERROR: configuration failed for package ‘curl’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/curl’ > Warning in install.packages : > installation of package ‘curl’ had non-zero exit status > * installing *source* package ‘openssl’ ... > ** package ‘openssl’ successfully unpacked and MD5 sums checked > Found pkg-config cflags and libs! > Using PKG_CFLAGS= > Using PKG_LIBS=-lssl -lcrypto > ------------------------- ANTICONF ERROR --------------------------- > Configuration failed because openssl was not found. Try installing: > * deb: libssl-dev (Debian, Ubuntu, etc) > * rpm: openssl-devel (Fedora, CentOS, RHEL) > * csw: libssl_dev (Solaris) > * brew: openssl@1.1 (Mac OSX) > If openssl is already installed, check that 'pkg-config' is in your > PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' > -------------------------------------------------------------------- > ERROR: configuration failed for package ‘openssl’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/openssl’ > Warning in install.packages : > installation of package ‘openssl’ had non-zero exit status > * installing *source* package ‘stringi’ ... > ** package ‘stringi’ successfully unpacked and MD5 sums checked > checking for local ICUDT_DIR... icu55/data > checking for R_HOME... /usr/lib/R > checking for R... /usr/lib/R/bin/R > checking for R >= 3.1.0 for C++11 use... yes > checking for R < 3.4.0 for CXX1X flag use... no > checking for cat... /bin/cat > checking for gcc... gcc -std=gnu99 > checking whether the C compiler works... no > configure: error: in `/tmp/Rtmpu3553h/R.INSTALL28ffe0ce527/stringi': > configure: error: C compiler cannot create executables > See `config.log' for more details > ERROR: configuration failed for package ‘stringi’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/stringi’ > Warning in install.packages : > installation of package ‘stringi’ had non-zero exit status > * installing *source* package ‘jsonlite’ ... > ** package ‘jsonlite’ successfully unpacked and MD5 sums checked > ** libs > gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o > gcc: error: unrecognized command line option '-fstack-protector-strong' > gcc: error: unrecognized command line option '-Wdate-time' > /usr/lib/R/etc/Makeconf:159: recipe for target 'base64.o' failed > make: *** [base64.o] Error 1 > ERROR: compilation failed for package ‘jsonlite’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/jsonlite’ > Warning in install.packages : > installation of package ‘jsonlite’ had non-zero exit status > ERROR: dependency ‘colorspace’ is not available for package ‘munsell’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/munsell’ > Warning in install.packages : > installation of package ‘munsell’ had non-zero exit status > ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/plyr’ > Warning in install.packages : > installation of package ‘plyr’ had non-zero exit status > ERROR: dependency ‘Rcpp’ is not available for package ‘bindrcpp’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/bindrcpp’ > Warning in install.packages : > installation of package ‘bindrcpp’ had non-zero exit status > ERROR: dependency ‘Rcpp’ is not available for package ‘tidyselect’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/tidyselect’ > Warning in install.packages : > installation of package ‘tidyselect’ had non-zero exit status > ERROR: dependencies ‘jsonlite’, ‘curl’, ‘openssl’ are not available for > package ‘httr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/httr’ > Warning in install.packages : > installation of package ‘httr’ had non-zero exit status > ERROR: dependency ‘stringi’ is not available for package ‘stringr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/stringr’ > Warning in install.packages : > installation of package ‘stringr’ had non-zero exit status > ERROR: dependency ‘Rcpp’ is not available for package ‘tibble’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/tibble’ > Warning in install.packages : > installation of package ‘tibble’ had non-zero exit status > ERROR: dependency ‘Rcpp’ is not available for package ‘xml2’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/xml2’ > Warning in install.packages : > installation of package ‘xml2’ had non-zero exit status > ERROR: dependencies ‘plyr’, ‘stringr’, ‘Rcpp’ are not available for package > ‘reshape2’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/reshape2’ > Warning in install.packages : > installation of package ‘reshape2’ had non-zero exit status > ERROR: dependencies ‘plyr’, ‘munsell’, ‘Rcpp’ are not available for package > ‘scales’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/scales’ > Warning in install.packages : > installation of package ‘scales’ had non-zero exit status > ERROR: dependency ‘tibble’ is not available for package ‘cellranger’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/cellranger’ > Warning in install.packages : > installation of package ‘cellranger’ had non-zero exit status > ERROR: dependency ‘stringr’ is not available for package ‘selectr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/selectr’ > Warning in install.packages : > installation of package ‘selectr’ had non-zero exit status > ERROR: dependencies ‘bindrcpp’, ‘Rcpp’, ‘tibble’ are not available for > package ‘dplyr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/dplyr’ > Warning in install.packages : > installation of package ‘dplyr’ had non-zero exit status > ERROR: dependency ‘tibble’ is not available for package ‘forcats’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/forcats’ > Warning in install.packages : > installation of package ‘forcats’ had non-zero exit status > ERROR: dependency ‘stringr’ is not available for package ‘lubridate’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/lubridate’ > Warning in install.packages : > installation of package ‘lubridate’ had non-zero exit status > ERROR: dependency ‘tibble’ is not available for package ‘purrr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/purrr’ > Warning in install.packages : > installation of package ‘purrr’ had non-zero exit status > ERROR: dependencies ‘Rcpp’, ‘tibble’ are not available for package ‘readr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/readr’ > Warning in install.packages : > installation of package ‘readr’ had non-zero exit status > ERROR: dependencies ‘digest’, ‘plyr’, ‘reshape2’, ‘scales’, ‘tibble’ are > not available for package ‘ggplot2’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/ggplot2’ > Warning in install.packages : > installation of package ‘ggplot2’ had non-zero exit status > ERROR: dependencies ‘Rcpp’, ‘readr’, ‘tibble’, ‘forcats’ are not available > for package ‘haven’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/haven’ > Warning in install.packages : > installation of package ‘haven’ had non-zero exit status > ERROR: dependencies ‘cellranger’, ‘Rcpp’, ‘tibble’ are not available for > package ‘readxl’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/readxl’ > Warning in install.packages : > installation of package ‘readxl’ had non-zero exit status > ERROR: dependencies ‘xml2’, ‘httr’, ‘selectr’ are not available for package > ‘rvest’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/rvest’ > Warning in install.packages : > installation of package ‘rvest’ had non-zero exit status > ERROR: dependencies ‘dplyr’, ‘purrr’, ‘Rcpp’, ‘stringi’, ‘tibble’, > ‘tidyselect’ are not available for package ‘tidyr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/tidyr’ > Warning in install.packages : > installation of package ‘tidyr’ had non-zero exit status > ERROR: dependencies ‘plyr’, ‘dplyr’, ‘tidyr’, ‘psych’, ‘stringr’, > ‘reshape2’ are not available for package ‘broom’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/broom’ > Warning in install.packages : > installation of package ‘broom’ had non-zero exit status > ERROR: dependencies ‘purrr’, ‘tibble’, ‘broom’, ‘dplyr’, ‘tidyr’ are not > available for package ‘modelr’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/modelr’ > Warning in install.packages : > installation of package ‘modelr’ had non-zero exit status > ERROR: dependencies ‘broom’, ‘dplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, > ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘purrr’, ‘readr’, ‘readxl’, > ‘stringr’, ‘tibble’, ‘rvest’, ‘tidyr’, ‘xml2’ are not available for package > ‘tidyverse’ > * removing ‘/home/popx/R/x86_64-pc-linux-gnu-library/3.4/tidyverse’ > Warning in install.packages : > installation of package ‘tidyverse’ had non-zero exit status > > The downloaded source packages are in > ‘/tmp/RtmplZrBGp/downloaded_packages’ > Warning message: > R graphics engine version 12 is not supported by this version of RStudio. > The Plots tab will be disabled until a newer version of RStudio is > installed. >> sessionInfo() > R version 3.4.1 (2017-06-30) > Platform: x86_64-pc-linux-gnu (64-bit) > Running under: Ubuntu 17.04 > > Matrix products: default > BLAS: /usr/lib/libblas/libblas.so.3.7.0 > LAPACK: /usr/lib/lapack/liblapack.so.3.7.0 > > locale: > [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8 > [5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8 > [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods > [7] base > > loaded via a namespace (and not attached): > [1] compiler_3.4.1 tools_3.4.1 > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
