Not possible to debug your specific problem without sample data [1][2][3], but 
learning how to setup and manage factors is a key skill for getting this right.

You will also make it less likely that the email you send gets damaged in 
transit if you send plain text email instead of HTML.

[1] 
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example

[2] http://adv-r.had.co.nz/Reproducibility.html

[3] https://cran.r-project.org/web/packages/reprex/index.html (read the 
vignette)
-- 
Sent from my phone. Please excuse my brevity.

On August 4, 2017 6:52:56 AM PDT, greg holly <mak.hho...@gmail.com> wrote:
>I have following codes for ggplots. The legends are given in the plot
>do
>not match with the values specified in the codes given below. Your
>helps
>highly appreciated.
>
>Greg
>
> library(ggplot2)
> p <- ggplot(a,aes(x=NO_BMI_FI_beta ,y=FI_beta ,color= Super.Pathway))+
> theme_bw() +theme(panel.border=element_blank()) +
> geom_point(size=3)
> p2<-p+scale_color_manual(name="Super.Pathway",
>labels=c("Amino Acid", "Cofactors and Vitamins", "Carbohydrate",
>"Energy",
>"Lipid", "Peptide", "Nucleotide"),
> values=c("Amino Acid"="red",
> "Cofactors and Vitamins"="purple",
>  "Carbohydrate"="darkgreen",
>  "Energy"="orange",
>  "Lipid"="darkblue",
>  "Peptide"="darkred",
>  "Nucleotide"="blue"))
>  p2
>
>       [[alternative HTML version deleted]]
>
>______________________________________________
>R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

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