Did not look to me like Windows was a factor here... OP referred to /home/paumarc/Bam. I think the issue was trying to access his own data using an inappropriate function. -- Sent from my phone. Please excuse my brevity.
On May 22, 2017 3:22:06 PM PDT, Jim Lemon <drjimle...@gmail.com> wrote: >Windows. A funny name for a operating system that doesn't let you see >anything. > >Jim > >On Mon, May 22, 2017 at 11:59 PM, Pau Marc Muñoz Torres ><paum...@gmail.com> wrote: >> i could make it worl, thanks for your help, it was usefull >> >> Pau Marc Muñoz Torres >> skype: pau_marc >> http://www.linkedin.com/in/paumarc >> http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ >> >> >> 2017-05-22 15:38 GMT+02:00 Pau Marc Muñoz Torres <paum...@gmail.com>: >> >>> hi to you both >>> >>> You are right peter, I probably miss understood the system.file >function. >>> I was trying to use it with a package from bioconductor and when i >saw that >>> it didn't work for me, I tested with readxl and still do not >working, so I >>> am doing something wrong with system.file >>> >>> the original script was >>> >>> >>> library(SICtools) >>> >>> bam1 <- system.file(package='SICtools','extdata','example1.bam') >>> >>> the example1.bam file is supposed to be at the working directory (i >>> changed the directory using setwd()), it was changed to >/home/paumarc/Bam >>> >>> i tried to change extdata for my working directory but it did not >work >>> >>> thanks >>> >>> Pau Marc Muñoz Torres >>> skype: pau_marc >>> http://www.linkedin.com/in/paumarc >>> http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ >>> >>> >>> 2017-05-22 14:53 GMT+02:00 peter dalgaard <pda...@gmail.com>: >>> >>>> >>>> > On 22 May 2017, at 14:43 , Pau Marc Muñoz Torres ><paum...@gmail.com> >>>> wrote: >>>> > >>>> > Hello everybody >>>> > >>>> > I am trying to use system.file but it returns not file found >>>> > >>>> > what I have done is >>>> > >>>> >> sample <- system.file("results.xlsx","estdata", package = >>>> > "readxl",mustWork = TRUE) >>>> > Error in system.file("results.xlsx", "estdata", package = >"readxl", >>>> > mustWork = TRUE) : >>>> > no file found >>>> > >>>> > i have checked the path was correct and the file exists with >>>> > >>>> > FILES <- file.path("results.xlsx") >>>> > present <- file.exists(FILES) >>>> > >>>> > and it returned a true values. Anyone can tell me which can be >the >>>> problem ? >>>> >>>> Not if you don't tell us WHERE you expect to find the file... >>>> >>>> Where is it located, and what is the value of FILES above? >>>> >>>> It is not unlikely that you misunderstande what system.file() is >supposed >>>> to do. >>>> >>>> -pd >>>> >>>> >>>> > >>>> > thanks >>>> > >>>> > Pau Marc Muñoz Torres >>>> > skype: pau_marc >>>> > http://www.linkedin.com/in/paumarc >>>> > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ >>>> > >>>> > [[alternative HTML version deleted]] >>>> > >>>> > ______________________________________________ >>>> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>> > https://stat.ethz.ch/mailman/listinfo/r-help >>>> > PLEASE do read the posting guide http://www.R-project.org/posti >>>> ng-guide.html >>>> > and provide commented, minimal, self-contained, reproducible >code. >>>> >>>> -- >>>> Peter Dalgaard, Professor, >>>> Center for Statistics, Copenhagen Business School >>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >>>> Phone: (+45)38153501 >>>> Office: A 4.23 >>>> Email: pd....@cbs.dk Priv: pda...@gmail.com >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>> >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > >______________________________________________ >R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
