Marc: You miss Yihui's point I think: roxygen2 will generate the (Namespace and other) files for you. See its documentation for how (the directives to put in your comments).
-- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Feb 6, 2017 at 9:38 AM, Marc Girondot via R-help <r-help@r-project.org> wrote: > Le 06/02/2017 à 17:14, Yihui Xie a écrit : >> >> If your package source is version controlled (meaning you are free to >> regret any time), I'd recommend you to delete the three files >> NAMESPACE, chr.Rd, and essai-package.Rd. Then try to roxygenize again. >> Basically the warnings you saw indicates that roxygen2 failed to find >> the line >> >> % Generated by roxygen2: do not edit by hand >> >> in your NAMESPACE and .Rd files, so it thinks these files were >> probably not previously generated by roxygen2. I think the cause is >> package.skeleton(), which generated the Rd files. Seriously, friends >> don't let friends use package.skeleton()... (it is 2017 now) > > Thanks ! It works perfectly after removing the /man/ folder and the > NAMESPACE file. > I didn't know that package.skeleton() was out-of-age ! > That's true that it is easy to generate the skeleton manually. > > Marc >> >> >> Regards, >> Yihui >> -- >> Yihui Xie <xieyi...@gmail.com> >> Web: http://yihui.name >> >> >> On Mon, Feb 6, 2017 at 9:46 AM, Marc Girondot via R-help >> <r-help@r-project.org> wrote: >>> >>> Hi, >>> >>> I used roxygen2 v5.0.1 to document my package, and all was ok. I have >>> just >>> updated to roxygen2 v6.0.0 and my script is broken and I can't find why. >>> >>> I have done a simple version of a package folder as a test with 3 files: >>> chr.R, essai-package.R and DESCRIPTION. >>> >>> Previously, I did: >>> >>> package.skeleton("essai",code_files=c('chr.R',"essai-package.R")) >>> roxygenize("essai") >>> system(paste0("R CMD build '", getwd(), "/essai'")) >>> install.packages(file.path(getwd(), "essai_1.0.tar.gz"), repos = NULL, >>> type="source") >>> >>> And it worked well. >>> >>> Now I get an error at the second line: roxygenize("essai") >>> >>>> roxygenize("essai") >>> >>> First time using roxygen2. Upgrading automatically... >>> Updating roxygen version in >>> >>> /Users/marcgirondot/Documents/Espace_de_travail_R/Package_Essai/essai/DESCRIPTION >>> Warning: The existing 'NAMESPACE' file was not generated by roxygen2, and >>> will not be overwritten. >>> Warning: The existing 'chr.Rd' file was not generated by roxygen2, and >>> will >>> not be overwritten. >>> Warning: The existing 'essai-package.Rd' file was not generated by >>> roxygen2, >>> and will not be overwritten. >>> >>> And of course it fails after. >>> >>> Are you aware of this situation ? And do you have a solution ? >>> >>> Thanks a lot >>> >>> Marc >>> >>> >>> A file DESCRIPTION: >>> >>> Package: essai >>> Type: Package >>> Title: Package Used For Try >>> Version: 1.0 >>> Date: 2017-02-06 >>> Author: Marc Girondot <marc.giron...@u-psud.fr> >>> Maintainer: Marc Girondot <marc.giron...@u-psud.fr> >>> Description: Trying package. >>> Depends: R (>= 2.14.2) >>> License: GPL-2 >>> LazyData: yes >>> LazyLoad: yes >>> Encoding: UTF-8 >>> RoxygenNote: 6.0.0 >>> >>> A file essai-package.R (essai=try in French): >>> >>> #' Trying package >>> #' >>> #' \tabular{ll}{ >>> #' Package: \tab essai\cr >>> #' Type: \tab Package\cr >>> #' Version: \tab 1.0 - build 1\cr >>> #' Date: \tab 2017-02-06\cr >>> #' License: \tab GPL (>= 2)\cr >>> #' LazyLoad: \tab yes\cr >>> #' } >>> #' @title The package essai >>> #' @author Marc Girondot \email{marc.girondot@@u-psud.fr} >>> #' @docType package >>> #' @name essai-package >>> >>> NULL >>> >>> A file chr.R: >>> >>> #' chr returns the characters defined by the codes >>> #' @title Return the characters defined by the codes >>> #' @author Based on this blog: >>> http://datadebrief.blogspot.com/2011/03/ascii-code-table-in-r.html >>> #' @return A string with characters defined by the codes >>> #' @param n The vector with codes >>> #' @description Return a string with characters defined by the codes. >>> J'essaye avec un code utf-8: ê. >>> #' @examples >>> #' chr(65:75) >>> #' chr(unlist(tapply(144:175, 144:175, function(x) {c(208, x)}))) >>> #' @encoding UTF-8 >>> #' @export >>> >>> >>> chr <- function(n) { >>> rawToChar(as.raw(n)) >>> } >>> >>> ______________________________________________ >>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide >>> http://www.R-project.org/posting-guide.html >>> and provide commented, minimal, self-contained, reproducible code. > > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
