Dear All:
I am trying to install the Bioconductor package “yeastExpData”. By the end
I got an error message, please see below. I am not sure what is wrong.
> source("http://bioconductor.org/biocLite.R";)
Bioconductor version 3.0 (BiocInstaller 1.16.5), ?biocLite for help
A new version of Bioconductor is available after installing the most recent
version of R; see http://bioconductor.org/install
> biocLite("yeastExpData")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.1.2.
Installing package(s) 'yeastExpData'
also installing the dependency ‘graph’
trying URL '
http://bioconductor.org/packages/3.0/bioc/bin/windows/contrib/3.1/graph_1.44.1.zip
'
Content type 'application/zip' length 2746668 bytes (2.6 Mb)
opened URL
downloaded 2.6 Mb
trying URL '
http://bioconductor.org/packages/3.0/data/experiment/bin/windows/contrib/3.1/yeastExpData_0.11.1.zip
'
Content type 'application/zip' length 1936545 bytes (1.8 Mb)
opened URL
downloaded 1.8 Mb
package ‘graph’ successfully unpacked and MD5 sums checked
package ‘yeastExpData’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\aaboueissa\AppData\Local\Temp\RtmpYNOhi3\downloaded_packages
Old packages: 'boot', 'class', 'cluster', 'codetools', 'foreign',
'KernSmooth',
'lattice', 'MASS', 'Matrix', 'mgcv', 'nlme', 'nnet', 'rpart', 'spatial',
'survival'
*Update all/some/none? [a/s/n]: a*
*Warning in install.packages(update[instlib == l, "Package"], l, contriburl
= contriburl, :*
* 'lib = "C:/Program Files/R/R-3.1.2/library"' is not writable*
*Error in install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, : *
* unable to install packages*
> library("yeastExpData")
Loading required package: graph
>
with thanks
abou
--
______________________
AbouEl-Makarim Aboueissa, PhD
University of Southern Maine
Department of Mathematics and Statistics
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