Hi- I’m compiling R from source and running into an issue when enabling --enable-R-shlib. I get the following below. I did try and add “-fPIC" to the bzip2 makefile with no luck.
/usr/bin/ld: /usr/local/apps/R/3.3.1/library/lib/libbz2.a(bzlib.o): relocation R_X86_64_32S against `.text' can not be used when making a shared object; recompile with -fPIC /usr/local/apps/R/3.3.1/library/lib/libbz2.a: could not read symbols: Bad value collect2: ld returned 1 exit status apps/R/3.3.1/library/include/ -c g_cntrlify.c -o g_cntrlify.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/usr/local/apps/R/3.3.1/library/include/ -I/usr/local/apps/R/3.3.1/library/include/ -c g_fontdb.c -o g_fontdb.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/usr/local/apps/R/3.3.1/library/include/ -I/usr/local/apps/R/3.3.1/library/include/ -c g_her_glyph.c -o g_her_glyph.o gfortran -fopenmp -fpic -g -O2 -c xxxpr.f -o xxxpr.o gcc -std=gnu99 -shared -fopenmp -L/usr/local/apps/R/3.3.1/library/lib -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -L../../lib -lRblas -lgfortran -lm -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm /usr/bin/ld: /usr/local/apps/R/3.3.1/library/lib/libbz2.a(bzlib.o): relocation R_X86_64_32S against `.text' can not be used when making a shared object; recompile with -fPIC /usr/local/apps/R/3.3.1/library/lib/libbz2.a: could not read symbols: Bad value collect2: ld returned 1 exit status make[3]: *** [libR.so] Error 1 make[3]: Leaving directory `/usr/local/apps/R/3.3.1/R-3.3.1-source/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/usr/local/apps/R/3.3.1/R-3.3.1-source/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/usr/local/apps/R/3.3.1/R-3.3.1-source/src' make: *** [R] Error 1 Any help would be appreciated. Christopher Barros | Sr. Systems Engineer| Information Technology Group | Harvard Business School| 617.496.5180<tel:617.496.5180>| cbar...@hbs.edu<mailto:cbar...@hbs.edu> [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
