I am a huge fan of pheatmap and use it for all my heatmaps. Alternatively you can use ggplot2 and geom_tile
Hth Ulrik Jim Lemon <drjimle...@gmail.com> schrieb am So., 18. Sep. 2016 01:35: > Hi Michael, > Maybe color2D.matplot (plotrix). Have a look at the examples. > > Jim > > > On Sat, Sep 17, 2016 at 4:10 AM, Michael Young <mikeyoun...@gmail.com> > wrote: > > I am currently using "aheatmap" which is generating heatmaps based on > > Pearson correlation. My data consists of RPKM values for genes from 2 > > groups. Each group has about 70 samples. > > > > Is there anyway that I can modify "aheatmap" so that it generates heat > maps > > based on the actual input values (RPKM) and not Pearson correlation? I > > want the heatmap to show high heat for higher RPKM and cold heat for > lower > > RPKM. > > If not, is there a package out there that can do this? > > > > Michael > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
