RobertsLRRI wrote:
Hello
does anyone know what algorithm is used to produce the hierarchical
clustering in the gplots package using the function heatmap.2? I think it
may be the complete linkage clustering algorithm, but I can't find a source
that seems reliable.
Did you look at the help page?
I get
Usage:
heatmap.2 (x,
# dendrogram control
Rowv = TRUE,
Colv=if(symm)"Rowv" else TRUE,
distfun = dist,
hclustfun = hclust,
Then ?hclust gives me
Usage:
hclust(d, method = "complete", members=NULL)
Thank you and sorry if I posted this in the wrong place. If I have, please
let me know and I will move it to the appropriate list.
--
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
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