On 03/05/2015 01:21 AM, Zaynab Mousavian wrote:
Hi all,
I have tried to install GO.db package in R, but the following error is
please ask questions about Bioconductor packages on the Bioconductor support
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You are using an old version of R / Bioconductor but a new version of RSQLite.
Use either a current version of R / Bioconductor or an old version of RSQLite,
as explained here https://support.bioconductor.org/p/63555.
If you are having trouble installing a current version of R on linux, indicate
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Martin
given to me:
biocLite(c("GO.db"))
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.1), R version 3.0.2.
Installing package(s) 'GO.db'
trying URL
'http://bioconductor.org/packages/2.13/data/annotation/src/contrib/GO.db_2.10.1.tar.gz'
Content type 'application/x-gzip' length 26094175 bytes (24.9 Mb)
opened URL==================================================
downloaded 24.9 Mb
* installing *source* package �GO.db� ...** R** inst** preparing
package for lazy loading** help*** installing help indices** building
package indices** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'GO.db', details:
call: match.arg(synchronous, c("off", "normal", "full"))
error: 'arg' must be NULL or a character vector
Error: loading failed
Execution halted
ERROR: loading failed* removing
�/home/zmousavian/R/x86_64-pc-linux-gnu-library/3.0/GO.db�
The downloaded source packages are in
�/tmp/RtmpBDs1Tq/downloaded_packages�
Warning messages:1: In install.packages(pkgs = pkgs, lib = lib, repos
= repos, ...) :
installation of package �GO.db� had non-zero exit status2: installed
directory not writable, cannot update packages 'colorspace','lattice',
'mgcv', 'survival'
Can anyone help me to install it?
Regards
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