Hi,
What exactly is the difference between using symm=TRUE and symm=FALSE in a
heatmap. More elaborately, when symm=FALSE, what does the heatmap plots because
it seems like it changes the scale and makes it asymmetric, even if x is
symmetric and square.
Additionally, is it possible to view the matrix that the heatmap plots? Here is
a sample code I have been testing:
rm(list = ls())
g <- graph.full(5) %du% graph.full(5) %du% graph.full(5)
g <- add.edges(g, c(1,6, 1,11, 6, 11))
adjMatrix=get.adjacency(g, sparse=FALSE)
heatmap3(adjMatrix, Rowv = NA, Colv = NA, symm=FALSE)
windows()
heatmap3(adjMatrix, Rowv = NA, Colv = NA, symm=TRUE)
Thanks,
Fayez
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