Hi Dario,
The maintainer of that package is:
Benjamin Auder
and I have copied him on this message. Usually it is best to include
the maintainer in this sort of situation.
Jim
On Fri, 1 Aug 2014 01:00:21 AM Dario Strbenac wrote:
> Hello,
>
> I would like to provide a helpful bug report to the maintainer of
Rmixmod,
> but I'm not skilled in memory profiling.
>
> The following example illustrates the problem :
>
> library(Rmixmod)
> genes <- matrix(rnorm(5000*50, 9, 2), nrow = 5000, ncol = 50)
> selected <- sample(5000, 25)
> columns <- split(1:50, rep(1:10, each = 5))
> lapply(1:100, function(index) # 100 resamples with replacement
> {
> lapply(1:5, function(fold) # 5-fold cross validation
> {
> apply(genes[selected, columns[[fold]]], 1, function(aGene)
> mixmodCluster(aGene, nbCluster = 1:3)) return(NULL)
> })
> })
>
> Even though no data was assigned to any variables, even if I do gc()
after
> the loop, 5 GB of RAM is used. This makes the software unusable in
a loop,
> because the server freezes when it runs out of RAM.
>
> May someone who is an expert help me ?
>
> --------------------------------------
> Dario Strbenac
> PhD Student
> University of Sydney
> Camperdown NSW 2050
> Australia
>
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible
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