And here is the result when sorting the same sequence on a windows box:
> bla = read.table("xx.txt",stringsAsFactors=F)
> bla = bla[,1]
> bla[1:10]
[1] "1000_DGFVALSK_2_run0" "1000_DGFVALSK_2_run0"
"1000_DGFVALSK_2_run0" "1000_DGFVALSK_2_run0"
[5] "1000_DGFVALSK_2_run0" "1000_DGFVALSK_2_run0"
"1001_DGGAWGTEQR_2_run0" "1001_DGGAWGTEQR_2_run0"
[9] "1001_DGGAWGTEQR_2_run0" "1001_DGGAWGTEQR_2_run0"
> sort(bla)[1:10]
[1] "1_AAAAAAALQAK_2_run0" "1_AAAAAAALQAK_2_run0"
"1_AAAAAAALQAK_2_run0" "1_AAAAAAALQAK_2_run0"
[5] "1_AAAAAAALQAK_2_run0" "1_AAAAAAALQAK_2_run0"
"10_AAATAEEPDPK_2_run0" "10_AAATAEEPDPK_2_run0"
[9] "10_AAATAEEPDPK_2_run0" "10_AAATAEEPDPK_2_run0"
--
Witold Eryk Wolski
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