Hi Are you 100% sure that you always want select only first item from v1,v2 and v3 and change it in each step of cycle and keep only last value from your cycle in first item in vectors v1-3?
Because this is what your cycle does. Petr From: [email protected] [mailto:[email protected]] On Behalf Of Steve Bellan Sent: Friday, July 04, 2014 12:53 AM To: [email protected] Subject: [R] applying operations within() a matrix's environment I am trying to optimize code for speed and readability for a fairly complex function inside an MCMC sampler. As of now I have a bunch of variables inside a function that get iteratively reset inside a loop. Something like this: set.seed(1) K <- 10 v1 <- rnorm(K) v2 <- rnorm(K) v3 <- rnorm(K) steps <- 5 row.active <- matrix(rbinom(K*steps, 1, .7), nr = K, nc = steps) cbind(v1,v2,v3) for(ii in 1:steps) { v1[row.active[,ii]] <- 2*v1[row.active[,ii]] v2[row.active[,ii]] <- 3*v3[row.active[,ii]]^(v1[row.active[,ii]]) v3[row.active[,ii]] <- (v2[row.active[,ii]] + v3[row.active[,ii]] + 3)^2 } cbind(v1,v2,v3) Id like to be able to do this more succinctly with something like the following. This would also allow me to store all the variables in a matrix, which seems better than having so many variables (I actually have about 50). v1 <- rnorm(K) v2 <- rnorm(K) v3 <- rnorm(K) vars <- cbind(v1,v2,v3) for(ii in 1:steps) { vars[row.active[,ii]] <- within(vars[row.active[,ii]], { v1 <- 2*v1 v2 <- 3*v3^v1 v3 <- (v2+v3 + 3)^2 }) } But I get this error because with() & within() don�t work on objects that aren�t environments such as matrices. > + . + Error in UseMethod("within") : no applicable method for 'within' applied to an object of class "c('double', 'numeric�)" It�s important that I keep this as a matrix and not a data.frame or list because I�m trying to optimize for speed. Help is much appreciated. Thanks! Steve Steve Bellan, PhD, MPH Post-doctoral Researcher Lauren Ancel Meyers Research Group Center for Computational Biology and Bioinformatics University of Texas at Austin http://www.bio.utexas.edu/research/meyers/steve_bellan/ [[alternative HTML version deleted]] ______________________________________________ [email protected]<mailto:[email protected]> mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. ________________________________ Tento e-mail a jakékoliv k nÄmu pÅipojené dokumenty jsou důvÄrné a jsou urÄeny pouze jeho adresátům. Jestliže jste obdržel(a) tento e-mail omylem, informujte laskavÄ neprodlenÄ jeho odesÃlatele. Obsah tohoto emailu i s pÅÃlohami a jeho kopie vymažte ze svého systému. Nejste-li zamýšleným adresátem tohoto emailu, nejste oprávnÄni tento email jakkoliv užÃvat, rozÅ¡iÅovat, kopÃrovat Äi zveÅejÅovat. 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